Gordonia phage Crater
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Detailed Information for Phage Crater
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByKylie Howell
Year Found2022
Location FoundManhattan, KS United States
Finding InstitutionKansas State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature20°C
GPS Coordinates39.186 N, 96.571 W Map
Discovery NotesDry thin particles with large rocks
Naming Notesoutside of Grace's apartment on Thurston street
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 9, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage2681
Genome length (bp)52539
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGTTAGGCAT
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
SubclusterDN3
Cluster Life CycleTemperate
Lysogeny NotesLysogenic as shown through liquid phage release
Other Cluster Members
Annotating InstitutionKansas State University
Annotation StatusIn GenBank
Number of Genes100
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Crater_1
(terminase small subunit)

Crater_2
(terminase large subunit)

Crater_3
(portal protein)

Crater_4
(capsid maturation protease)

Crater_5
(scaffolding protein)

Crater_6
(LamD-like capsid decoration protein)

Crater_7
(major capsid protein)

Crater_8

Crater_9
(head-to-tail adaptor)

Crater_10
(head-to-tail stopper)

Crater_11

Crater_12
(tail terminator)

Crater_13
(major tail protein)

Crater_14
(tail assembly chaperone)

Crater_15
(tail assembly chaperone)

Crater_16
(tape measure protein)

Crater_17
(minor tail protein)

Crater_18
(minor tail protein)

Crater_19

Crater_20
(lysin A, protease C39 domain)

Crater_21
(lysin A, glycosyl hydrolase domain)

Crater_22
(holin)

Crater_23

Crater_24

Crater_25

Crater_26
(lysin B)

Crater_27
(minor tail protein)

Crater_28

Crater_29

Crater_30

Crater_31
(minor tail protein)

Crater_32
(minor tail protein)

Crater_33
(minor tail protein)

Crater_34

Crater_35

Crater_36
(helix-turn-helix DNA-binding domain protein)

Crater_37

Crater_38

Crater_39

Crater_40

Crater_41
(helix-turn-helix DNA-binding domain protein)

Crater_42

Crater_43

Crater_44

Crater_45

Crater_46

Crater_47

Crater_48

Crater_49
(tyrosine integrase)

Crater_50
(helix-turn-helix DNA-binding domain protein)

Crater_51

Crater_52
(IrrE-like protein)

Crater_53

Crater_54
(HNH endonuclease)

Crater_55

Crater_56

Crater_57

Crater_58
(antirepressor)

Crater_59

Crater_60

Crater_61
(excise)

Crater_62

Crater_63

Crater_64

Crater_65

Crater_66
(WhiB family transcription factor)

Crater_67

Crater_68

Crater_69
(exonuclease)

Crater_70

Crater_71

Crater_72

Crater_73

Crater_74

Crater_75

Crater_76

Crater_77

Crater_78

Crater_79

Crater_80

Crater_81

Crater_82

Crater_83

Crater_84

Crater_85

Crater_86

Crater_87
(G-I-Y Y-I-G endonuclease)

Crater_88

Crater_89

Crater_90
(RusA-like resolvase)

Crater_91

Crater_92

Crater_93

Crater_94

Crater_95

Crater_96

Crater_97

Crater_98

Crater_99

Crater_100
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR434025
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4.3x10^10 pfu/ml
Pitt Freezer Box# 160
Pitt Freezer Box Grid# C3
Available Files
EM PictureDownload
GenBank File for PhameratorDownload