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Propionibacterium phage Kubed
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Detailed Information for Phage Kubed
Discovery Information
Isolation HostPropionibacterium acnes ATCC 6919
Former namesTheChosen1
Found BySusy Mendez
Year Found2012
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature37°C
GPS Coordinates34.065 N, 118.4425 W Map
Discovery NotesPhage isolation and genome annotation performed by Samantha Capati, Susy Mendez, and Jamie Pumford (UCLA). DNA preparation performed by Krisanavane Reddi (UCLA). Assembly performed by William Villella (UCLA) and confirmed by Charles Bowman (University of Pittsburgh). Quality control of annotation results performed by Jordan Moberg Parker and Dallas Mould (UCLA).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 26, 2015
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage71
Genome length (bp)29461
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCGTACGGCTT
GC Content54.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque Notesclear plaques;
average diameter of 3 mm
MorphotypeSiphoviridae
Number of Genes44
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKR337645
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator 2011UCLAbruinVP
SEA Lysate Titer 3.2x10^6 pfu/ml
Date of SEA Lysate Titering May 22, 2012
Pitt Freezer Box# 28
Pitt Freezer Box Grid# D4
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload