Microbacterium phage OlinDD
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Detailed Information for Phage OlinDD
Discovery Information
Isolation HostMicrobacterium paraoxydans NWU1
Found ByDayton D. Dolincheck
Year Found2016
Location FoundLincoln, NE USA
Finding InstitutionNebraska Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.84 N, 96.65027 W Map
Discovery NotesSoil was a little moist and clumpy
Naming NotesI found it outside of Nebraska Wesleyan University's Science building by the name of Olin. I also used my initials.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1791
Genome length (bp)63123
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length3158 bp
GC Content64.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterED
SubclusterED1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionNebraska Wesleyan University
Annotation StatusIn GenBank
Plaque NotesThe plaques were very round, clear, and consistent.
MorphotypeSiphoviridae
Number of Genes114
Number of tRNAs4
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

OlinDD_1

OlinDD_2

OlinDD_3

OlinDD_4

OlinDD_5

OlinDD_6

OlinDD_7

OlinDD_8

OlinDD_9

OlinDD_10

OlinDD_11

OlinDD_12

OlinDD_13

OlinDD_14

OlinDD_15

OlinDD_16

OlinDD_17

OlinDD_18

OlinDD_19 — tRNA
(tRNA-Asn(gtt))

OlinDD_20 — tRNA
(tRNA-Thr(agt))

OlinDD_21 — tRNA
(tRNA-Tyr(gta))

OlinDD_22

OlinDD_23

OlinDD_24

OlinDD_25

OlinDD_26

OlinDD_27

OlinDD_28
(NrdH-like glutaredoxin)

OlinDD_29
(exonuclease)

OlinDD_30

OlinDD_31
(terminase)

OlinDD_32
(portal protein)

OlinDD_33
(capsid maturation protease)

OlinDD_34

OlinDD_35
(major capsid protein)

OlinDD_36

OlinDD_37

OlinDD_38
(phosphoesterase)

OlinDD_39

OlinDD_40
(head-to-tail stopper)

OlinDD_41

OlinDD_42
(tail terminator)

OlinDD_43

OlinDD_44

OlinDD_45

OlinDD_46
(tail assembly chaperone)

OlinDD_47
(tail assembly chaperone)

OlinDD_48
(tape measure protein)

OlinDD_49

OlinDD_50
(minor tail protein)

OlinDD_51

OlinDD_52

OlinDD_53

OlinDD_54
(endolysin)

OlinDD_55

OlinDD_56

OlinDD_57
(RuvC-like resolvase)

OlinDD_58

OlinDD_59

OlinDD_60

OlinDD_61

OlinDD_62

OlinDD_63
(DNA primase/polymerase)

OlinDD_64 — tRNA
(tRNA-Lys(ttt))

OlinDD_65

OlinDD_66

OlinDD_67

OlinDD_68
(exonuclease)

OlinDD_69

OlinDD_70
(exonuclease)

OlinDD_71

OlinDD_72

OlinDD_73

OlinDD_74
(RNA ligase)

OlinDD_75

OlinDD_76
(polynucleotide kinase)

OlinDD_77
(DNA helicase)

OlinDD_78

OlinDD_79

OlinDD_80

OlinDD_81

OlinDD_82

OlinDD_83

OlinDD_84

OlinDD_85

OlinDD_86

OlinDD_87

OlinDD_88

OlinDD_89

OlinDD_90

OlinDD_91

OlinDD_92

OlinDD_93

OlinDD_94

OlinDD_95

OlinDD_96

OlinDD_97

OlinDD_98
(helix-turn-helix DNA binding protein)

OlinDD_99

OlinDD_100

OlinDD_101

OlinDD_102

OlinDD_103

OlinDD_104

OlinDD_105

OlinDD_106

OlinDD_107

OlinDD_108

OlinDD_109

OlinDD_110

OlinDD_111

OlinDD_112

OlinDD_113

OlinDD_114

OlinDD_115

OlinDD_116

OlinDD_117

OlinDD_118

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH271307
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 45
Pitt Freezer Box Grid# F6
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload