Gordonia phage Pytheas
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Detailed Information for Phage Pytheas
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJ. McCormack, E. O'Meara, G. Pal, and J. Shapira
Year Found2020
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.444295 N, 79.956074 W Map
Discovery Notesdiscovered by Jamie McCormack, Erin O'Meara, Gurleen Pal, and Jake Shapira. Jake Shapira collected the soil sample.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 27, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage491
Genome length (bp)53520
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGTACGGCAT
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCY
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes83
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Pytheas_1
(terminase small subunit)

Pytheas_2
(terminase large subunit)

Pytheas_3
(portal protein)

Pytheas_4
(capsid maturation protease)

Pytheas_5
(scaffolding protein)

Pytheas_6
(capsid decoration protein)

Pytheas_7
(major capsid protein)

Pytheas_8

Pytheas_9
(head-to-tail adaptor)

Pytheas_10
(head-to-tail stopper)

Pytheas_11

Pytheas_12

Pytheas_13
(tail terminator)

Pytheas_14
(major tail protein)

Pytheas_15
(tail assembly chaperone)

Pytheas_16
(tail assembly chaperone)

Pytheas_17
(lipoprotein)

Pytheas_18
(tape measure protein)

Pytheas_19
(minor tail protein)

Pytheas_20
(minor tail protein)

Pytheas_21

Pytheas_22
(lysin A, L-Ala-D-Glu peptidase domain)

Pytheas_23

Pytheas_24
(lysin A, glycosyl hydrolase domain)

Pytheas_25
(holin)

Pytheas_26

Pytheas_27

Pytheas_28
(lysin B)

Pytheas_29
(minor tail protein)

Pytheas_30

Pytheas_31
(minor tail protein)

Pytheas_32

Pytheas_33

Pytheas_34
(tyrosine integrase)

Pytheas_35

Pytheas_36
(RelB-like antitoxin)

Pytheas_37
(RelE-like toxin)

Pytheas_38

Pytheas_39
(tyrosine integrase)

Pytheas_40
(helix-turn-helix DNA binding domain protein)

Pytheas_41
(IrrE-like protein)

Pytheas_42

Pytheas_43
(methyltransferase)

Pytheas_44

Pytheas_45
(immunity repressor)

Pytheas_46
(Cro protein)

Pytheas_47

Pytheas_48
(antirepressor)

Pytheas_49

Pytheas_50

Pytheas_51
(excise)

Pytheas_52

Pytheas_53

Pytheas_54

Pytheas_55

Pytheas_56

Pytheas_57

Pytheas_58

Pytheas_59
(RecE-like exonuclease)

Pytheas_60
(RecT-like ssDNA binding protein)

Pytheas_61

Pytheas_62

Pytheas_63

Pytheas_64
(DnaJ-like chaperonin)

Pytheas_65

Pytheas_66

Pytheas_67

Pytheas_68

Pytheas_69

Pytheas_70

Pytheas_71

Pytheas_72

Pytheas_73

Pytheas_74
(G-I-Y Y-I-G endonuclease)

Pytheas_75
(RepA-like replication initiator)

Pytheas_76
(helicase loader)

Pytheas_77

Pytheas_78
(rusa-like resolvase)

Pytheas_79

Pytheas_80

Pytheas_81
(helix-turn-helix DNA binding domain protein)

Pytheas_82

Pytheas_83
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP434460
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 126
Pitt Freezer Box Grid# B4
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload