Streptomyces phage Rikishi
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Detailed Information for Phage Rikishi
Discovery Information
Isolation HostStreptomyces griseus ATCC 10137
Found ByDalton Seiler & Drew Wolfe
Year Found2024
Location FoundAlbion, IL United States
Finding InstitutionUniversity of Evansville
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates38.43662 N, 88.07433 W Map
Discovery NotesThe soil was moist and brown in complexion, having a very pungent earthy smell.
Naming NotesIt's a cool name
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage1582
Genome length (bp)132567
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length12494 bp
GC Content49.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBE
SubclusterBE2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Evansville
Annotation StatusIn GenBank
Number of Genes245
Number of tRNAs42
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Rikishi_1

Rikishi_2

Rikishi_3

Rikishi_4

Rikishi_5

Rikishi_6
(Lsr2-like DNA binding protein)

Rikishi_7

Rikishi_8

Rikishi_9

Rikishi_10

Rikishi_11

Rikishi_12
(ParB N-terminal-like domain)

Rikishi_13

Rikishi_14

Rikishi_15

Rikishi_16

Rikishi_17

Rikishi_18

Rikishi_19

Rikishi_20

Rikishi_21

Rikishi_22

Rikishi_23

Rikishi_24

Rikishi_25

Rikishi_26

Rikishi_27

Rikishi_28
(HNH endonuclease)

Rikishi_29

Rikishi_30
(ThyX-like thymidylate synthase)

Rikishi_31

Rikishi_32

Rikishi_33

Rikishi_34

Rikishi_35

Rikishi_36

Rikishi_37

Rikishi_38

Rikishi_39 — tRNA
(tRNA-Thr(cgt))

Rikishi_40
(HNH endonulease)

Rikishi_41
(endolysin)

Rikishi_42

Rikishi_43

Rikishi_44
(glycosyltransferase)

Rikishi_45
(ribonucleotide reductase)

Rikishi_46
(LysM-like peptidoglycan binding protein)

Rikishi_47

Rikishi_48

Rikishi_49
(portal protein)

Rikishi_50

Rikishi_51
(capsid maturation protease)

Rikishi_52
(major capsid protein)

Rikishi_53

Rikishi_54
(head-to-tail adaptor protein)

Rikishi_55

Rikishi_56

Rikishi_57

Rikishi_58
(major tail protein)

Rikishi_59
(tail assembly chaperone)

Rikishi_60

Rikishi_61
(tape measure protein)

Rikishi_62
(minor tail protein)

Rikishi_63
(minor tail protein)

Rikishi_64

Rikishi_65
(minor tail protein)

Rikishi_66
(minor tail protein)

Rikishi_67

Rikishi_68

Rikishi_69

Rikishi_70
(HNH endonuclease)

Rikishi_71
(metallophosphoesterase)

Rikishi_72
(holin)

Rikishi_73

Rikishi_74

Rikishi_75

Rikishi_76

Rikishi_77

Rikishi_78
(DnaB-like dsDNA helicase)

Rikishi_79

Rikishi_80
(DNA primase)

Rikishi_81
(SSB protein)

Rikishi_82
(DnaE-like DNA polymerase III alpha)

Rikishi_83

Rikishi_84
(MazG-like nucleotide pyrophosphohydrolase)

Rikishi_85
(RecA-like DNA recombinase)

Rikishi_86

Rikishi_87
(holiday junction resolvase)

Rikishi_88

Rikishi_89

Rikishi_90

Rikishi_91
(Cas4 family exonuclease)

Rikishi_92
(RuvC-like resolvase)

Rikishi_93
(DprA-like aaDNA binding protein)

Rikishi_94
(helix-turn-helix DNA binding domain protein)

Rikishi_95
(methyltransferase)

Rikishi_96
(thymidylate kinase)

Rikishi_97

Rikishi_98

Rikishi_99
(terminase)

Rikishi_100
(HNH endonuclease)

Rikishi_101

Rikishi_102 — tRNA
(tRNA-Gly(tcc))

Rikishi_103 — tRNA
(tRNA-Gln(ctg))

Rikishi_104 — tRNA
(tRNA-Trp(cca))

Rikishi_105

Rikishi_106

Rikishi_107 — tRNA
(tRNA-Pro(tgg))

Rikishi_108 — tRNA
(tRNA-Pro(tgg))

Rikishi_109
(nucleotidyl transferase)

Rikishi_110
(FtsK-like DNA translocase)

Rikishi_111

Rikishi_112 — tRNA
(tRNA-Ile(tat))

Rikishi_113

Rikishi_114 — tRNA
(tRNA-Leu(taa))

Rikishi_115

Rikishi_116

Rikishi_117 — tRNA
(tRNA-Ser(gga))

Rikishi_118

Rikishi_119

Rikishi_120

Rikishi_121

Rikishi_122

Rikishi_123

Rikishi_124 — tRNA
(tRNA-Asp(gtc))

Rikishi_125

Rikishi_126

Rikishi_127 — tRNA
(tRNA-Asp(gtc))

Rikishi_128

Rikishi_129
(Ro-like RNA binding protein)

Rikishi_130

Rikishi_131

Rikishi_132

Rikishi_133

Rikishi_134
(DNA binding protein)

Rikishi_135

Rikishi_136

Rikishi_137

Rikishi_138

Rikishi_139

Rikishi_140 — tRNA
(tRNA-Glu(ctc))

Rikishi_141

Rikishi_142 — tRNA
(tRNA-Glu(ttc))

Rikishi_143 — tRNA
(tRNA-Val(tac))

Rikishi_144 — tRNA
(tRNA-Leu(tag))

Rikishi_145 — tRNA
(tRNA-Leu(tag))

Rikishi_146 — tRNA
(tRNA-Phe(gaa))

Rikishi_147
(HNH endonuclease)

Rikishi_148 — tRNA
(tRNA-Gly(gcc))

Rikishi_149 — tRNA
(tRNA-Arg(tct))

Rikishi_150

Rikishi_151

Rikishi_152

Rikishi_153 — tRNA
(tRNA-Ala(tgc))

Rikishi_154 — tRNA
(tRNA-Lys(ctt))

Rikishi_155
(peptidase)

Rikishi_156

Rikishi_157 — tRNA
(tRNA-Asn(gtt))

Rikishi_158

Rikishi_159

Rikishi_160

Rikishi_161

Rikishi_162 — tRNA
(tRNA-Asn(gtt))

Rikishi_163
(band-7-like membrane protein)

Rikishi_164

Rikishi_165

Rikishi_166 — tRNA
(tRNA-Arg(cct))

Rikishi_167

Rikishi_168 — tRNA
(tRNA-Ala(ggc))

Rikishi_169 — tRNA
(tRNA-Lys(ctt))

Rikishi_170 — tRNA
(tRNA-Lys(ctt))

Rikishi_171

Rikishi_172 — tRNA
(tRNA-Lys(ttt))

Rikishi_173

Rikishi_174 — tRNA
(tRNA-Arg(tcg))

Rikishi_175

Rikishi_176 — tRNA
(tRNA-Met(cat))

Rikishi_177 — tRNA
(tRNA-Met(cat))

Rikishi_178

Rikishi_179

Rikishi_180 — tRNA
(tRNA-Tyr(gta))

Rikishi_181 — tRNA
(tRNA-His(gtg))

Rikishi_182

Rikishi_183

Rikishi_184

Rikishi_185 — tRNA
(tRNA-Thr(tgt))

Rikishi_186 — tRNA
(tRNA-Thr(ggt))

Rikishi_187

Rikishi_188 — tRNA
(tRNA-Arg(acg))

Rikishi_189
(DnaQ-like (DNA Polymerase III subunit))

Rikishi_190

Rikishi_191

Rikishi_192 — tmRNA
(Tag peptide: ANSNVASAYALAA*)

Rikishi_193

Rikishi_194

Rikishi_195
(acetyltransferase)

Rikishi_196

Rikishi_197

Rikishi_198 — tRNA

Rikishi_199

Rikishi_200

Rikishi_201

Rikishi_202

Rikishi_203

Rikishi_204
(RNA ligase)

Rikishi_205

Rikishi_206

Rikishi_207

Rikishi_208

Rikishi_209
(polynucleotide kinase)

Rikishi_210

Rikishi_211

Rikishi_212

Rikishi_213 — tRNA
(tRNA-Leu(gag))

Rikishi_214

Rikishi_215

Rikishi_216 — tRNA
(tRNA-Val(gac))

Rikishi_217
(SprT-like protease)

Rikishi_218

Rikishi_219

Rikishi_220

Rikishi_221 — tRNA
(tRNA-Leu(caa))

Rikishi_222

Rikishi_223 — tRNA
(tRNA-Ser(gct))

Rikishi_224

Rikishi_225

Rikishi_226

Rikishi_227

Rikishi_228

Rikishi_229

Rikishi_230

Rikishi_231

Rikishi_232
(deoxycytidylate deaminase)

Rikishi_233
(phosphoesterase)

Rikishi_234

Rikishi_235

Rikishi_236
(WhiB family transcription factor)

Rikishi_237

Rikishi_238

Rikishi_239

Rikishi_240

Rikishi_241

Rikishi_242

Rikishi_243

Rikishi_244

Rikishi_245

Rikishi_246 — tRNA
(tRNA-Gln(ttg))

Rikishi_247

Rikishi_248

Rikishi_249

Rikishi_250

Rikishi_251

Rikishi_252

Rikishi_253
(HNH endonuclease)

Rikishi_254
(thioredoxin)

Rikishi_255

Rikishi_256

Rikishi_257

Rikishi_258

Rikishi_259

Rikishi_260

Rikishi_261
(HNH endonuclease)

Rikishi_262

Rikishi_263

Rikishi_264

Rikishi_265

Rikishi_266

Rikishi_267

Rikishi_268
(Lsr2-like DNA bridging protein)

Rikishi_269

Rikishi_270

Rikishi_271

Rikishi_272

Rikishi_273

Rikishi_274

Rikishi_275

Rikishi_276

Rikishi_277

Rikishi_278

Rikishi_279

Rikishi_280

Rikishi_281

Rikishi_282

Rikishi_283

Rikishi_284

Rikishi_285

Rikishi_286

Rikishi_287

Rikishi_288
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPV876926
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 196
Pitt Freezer Box Grid# F11
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload