Streptomyces phage Riptide
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Detailed Information for Phage Riptide
Discovery Information
Isolation HostStreptomyces mirabilis NRRL B-2400
Found ByAbdullah Shahzad & Nicholas Nguyen
Year Found2024
Location FoundOdenton, MD United States of America
Finding InstitutionUniversity of Maryland, Baltimore County
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates39.069053 N, 76.724572 W Map
Discovery NotesFound in a soil sample collected on September 4, 2024 from a garden bed in Odenton, Maryland.
Naming NotesNamed after a sword from Percy Jackson
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 14, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage1733
Genome length (bp)132142
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length10690 bp
GC Content49.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBE
SubclusterBE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Maryland, Baltimore County
Annotation StatusQC Complete
Plaque NotesRound with 3 mm diameter, and turbid appearance
MorphotypeSiphoviridae
Number of Genes236
Number of tRNAs39
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Riptide_1

Riptide_2

Riptide_3

Riptide_4

Riptide_5

Riptide_6

Riptide_7
(Lsr2-like DNA bridging protein)

Riptide_8

Riptide_9

Riptide_10
(ParB N-terminal-like domain)

Riptide_11

Riptide_12
(ParB N-terminal-like domain)

Riptide_13

Riptide_14

Riptide_15

Riptide_16

Riptide_17

Riptide_18

Riptide_19

Riptide_20

Riptide_21
(HNH endonuclease)

Riptide_22

Riptide_23

Riptide_24
(ThyX-like thymidylate synthase)

Riptide_25

Riptide_26
(MutT-like nucleotide pyrophosphohydrolase)

Riptide_27

Riptide_28

Riptide_29

Riptide_30

Riptide_31

Riptide_32

Riptide_33

Riptide_34 — tRNA
(tRNA-Thr(cgt))

Riptide_35
(HNH endonuclease)

Riptide_36

Riptide_37
(glycosyltransferase)

Riptide_38

Riptide_39
(glycosyltransferase)

Riptide_40
(ribonucleotide reductase)

Riptide_41
(endolysin)

Riptide_42

Riptide_43

Riptide_44
(portal protein)

Riptide_45

Riptide_46
(capsid maturation protease)

Riptide_47
(major capsid protein)

Riptide_48

Riptide_49
(head-to-tail adaptor)

Riptide_50
(head-to-tail stopper)

Riptide_51

Riptide_52

Riptide_53
(major tail protein)

Riptide_54
(tail assembly chaperone)

Riptide_55
(tail assembly chaperone)

Riptide_56
(tape measure protein)

Riptide_57
(minor tail protein)

Riptide_58
(minor tail protein)

Riptide_59

Riptide_60
(minor tail protein)

Riptide_61
(minor tail protein)

Riptide_62

Riptide_63

Riptide_64

Riptide_65
(HNH endonuclease)

Riptide_66
(metallophosphatase)

Riptide_67
(holin)

Riptide_68

Riptide_69
(helix-turn-helix DNA binding domain, MerR-like)

Riptide_70

Riptide_71

Riptide_72

Riptide_73
(DnaB-like dsDNA helicase)

Riptide_74
(DNA primase)

Riptide_75
(SSB protein)

Riptide_76
(DnaE-like DNA polymerase III (alpha))

Riptide_77

Riptide_78
(MazG-like nucleotide pyrophosphohydrolase)

Riptide_79
(RecA-like DNA recombinase)

Riptide_80

Riptide_81
(Holliday junction resolvase)

Riptide_82

Riptide_83

Riptide_84
(Cas4 exonuclease)

Riptide_85

Riptide_86
(RuvC-like resolvase)

Riptide_87
(DprA-like ssDNA binding protein)

Riptide_88
(helix-turn-helix DNA binding domain)

Riptide_89
(methyltransferase)

Riptide_90
(thymidylate kinase)

Riptide_91

Riptide_92
(terminase, small subunit)

Riptide_93
(terminase, large subunit)

Riptide_94
(HNH endonuclease)

Riptide_95

Riptide_96 — tRNA
(tRNA-Gly(tcc))

Riptide_97 — tRNA
(tRNA-Gln(ctg))

Riptide_98 — tRNA
(tRNA-Trp(cca))

Riptide_99 — tRNA
(tRNA-Pro(tgg))

Riptide_100 — tRNA
(tRNA-Pro(tgg))

Riptide_101
(nucleotidyl transferase)

Riptide_102
(FtsK-like DNA translocase)

Riptide_103

Riptide_104 — tRNA
(tRNA-Ile(tat))

Riptide_105

Riptide_106

Riptide_107

Riptide_108

Riptide_109

Riptide_110 — tRNA
(tRNA-Ser(tga))

Riptide_111

Riptide_112

Riptide_113

Riptide_114

Riptide_115

Riptide_116 — tRNA
(tRNA-Asp(gtc))

Riptide_117

Riptide_118

Riptide_119

Riptide_120

Riptide_121 — tRNA
(tRNA-Asp(gtc))

Riptide_122

Riptide_123

Riptide_124
(Ro-like RNA binding protein)

Riptide_125

Riptide_126

Riptide_127

Riptide_128

Riptide_129 — tRNA
(tRNA-Glu(ctc))

Riptide_130

Riptide_131

Riptide_132 — tRNA
(tRNA-Val(tac))

Riptide_133 — tRNA
(tRNA-Leu(tag))

Riptide_134 — tRNA
(tRNA-Leu(tag))

Riptide_135 — tRNA
(tRNA-Gly(gcc))

Riptide_136 — tRNA
(tRNA-Arg(tct))

Riptide_137

Riptide_138

Riptide_139

Riptide_140 — tRNA
(tRNA-Ala(tgc))

Riptide_141 — tRNA
(tRNA-Lys(ctt))

Riptide_142
(cysteine protease)

Riptide_143

Riptide_144

Riptide_145 — tRNA
(tRNA-Asn(gtt))

Riptide_146

Riptide_147 — tRNA
(tRNA-Asn(gtt))

Riptide_148

Riptide_149

Riptide_150 — tRNA
(tRNA-Arg(cct))

Riptide_151

Riptide_152 — tRNA
(tRNA-Ala(ggc))

Riptide_153 — tRNA
(tRNA-Lys(ctt))

Riptide_154 — tRNA
(tRNA-Lys(ttt))

Riptide_155

Riptide_156
(ribosomal protein, uL24)

Riptide_157 — tRNA
(tRNA-Arg(tcg))

Riptide_158

Riptide_159 — tRNA
(tRNA-Met(cat))

Riptide_160
(HNH endonuclease)

Riptide_161 — tRNA
(tRNA-Met(cat))

Riptide_162

Riptide_163

Riptide_164

Riptide_165 — tRNA
(tRNA-Tyr(gta))

Riptide_166

Riptide_167 — tRNA
(tRNA-His(gtg))

Riptide_168

Riptide_169

Riptide_170 — tRNA
(tRNA-Cys(gca))

Riptide_171 — tRNA
(tRNA-Thr(tgt))

Riptide_172 — tRNA
(tRNA-Thr(ggt))

Riptide_173

Riptide_174 — tRNA
(tRNA-Arg(acg))

Riptide_175

Riptide_176
(DnaQ-like (DNA polymerase III subunit))

Riptide_177 — tmRNA
(Tag peptide: ANSKFAFALAA*)

Riptide_178

Riptide_179
(peptidase)

Riptide_180

Riptide_181

Riptide_182

Riptide_183
(acetyltransferase)

Riptide_184

Riptide_185

Riptide_186
(histidine triad nucleotide binding protein)

Riptide_187

Riptide_188

Riptide_189

Riptide_190

Riptide_191

Riptide_192
(RNA ligase)

Riptide_193

Riptide_194

Riptide_195
(polynucleotide kinase)

Riptide_196

Riptide_197

Riptide_198

Riptide_199

Riptide_200

Riptide_201

Riptide_202 — tRNA
(tRNA-Leu(gag))

Riptide_203

Riptide_204 — tRNA
(tRNA-Val(gac))

Riptide_205

Riptide_206 — tRNA
(tRNA-Trp(cca))

Riptide_207 — tRNA
(tRNA-Leu(caa))

Riptide_208

Riptide_209 — tRNA
(tRNA-Ser(gct))

Riptide_210

Riptide_211

Riptide_212

Riptide_213

Riptide_214

Riptide_215

Riptide_216

Riptide_217

Riptide_218
(deoxycytidylate deaminase)

Riptide_219
(rIIA-like protein)

Riptide_220
(rIIB-like protein)

Riptide_221
(phosphoesterase)

Riptide_222

Riptide_223

Riptide_224
(WhiB family transcription factor)

Riptide_225

Riptide_226

Riptide_227

Riptide_228

Riptide_229

Riptide_230

Riptide_231

Riptide_232

Riptide_233 — tRNA
(tRNA-Gln(ttg))

Riptide_234

Riptide_235

Riptide_236

Riptide_237

Riptide_238

Riptide_239

Riptide_240

Riptide_241

Riptide_242

Riptide_243
(thioredoxin)

Riptide_244

Riptide_245

Riptide_246

Riptide_247
(HNH endonuclease)

Riptide_248

Riptide_249

Riptide_250

Riptide_251

Riptide_252

Riptide_253

Riptide_254

Riptide_255

Riptide_256

Riptide_257

Riptide_258
(ribosomal protein L7/L12, c terminus domain)

Riptide_259
(ribosomal protein L7/L12, c terminus domain)

Riptide_260

Riptide_261

Riptide_262
(Lsr2-like DNA bridging protein)

Riptide_263

Riptide_264

Riptide_265
(ParB-N-terminal-like domain)

Riptide_266

Riptide_267
(ParB-N-terminal-like domain)

Riptide_268

Riptide_269

Riptide_270

Riptide_271

Riptide_272

Riptide_273

Riptide_274

Riptide_275

Riptide_276
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 212
Pitt Freezer Box Grid# B11
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload