Streptomyces phage Scheme
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Detailed Information for Phage Scheme
Discovery Information
Isolation HostStreptomyces lividans JI 1326
Found ByStephane Cui, Ayush Mishra
Year Found2021
Location FoundClayton, MO United States
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates38.6455 N, 90.3127 E Map
Discovery NotesFound and isolated with phage Ponzi. Plaque and Digest pictures are identical to Ponzi's.
Naming NotesRelated to phage "Ponzi"
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedOct 7, 2024
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage42
Genome length (bp)134433
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length11238 bp
GC Content50.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBE
SubclusterBE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionWashington University in St. Louis
Annotation StatusQC Complete
Number of Genes233
Number of tRNAs43
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Scheme_1

Scheme_2

Scheme_3

Scheme_4

Scheme_5

Scheme_6

Scheme_7

Scheme_8
(Lsr2-like DNA bridging protein)

Scheme_9

Scheme_10
(ParB-like nuclease domain)

Scheme_11

Scheme_12
(ParB-like nuclease domain)

Scheme_13

Scheme_14

Scheme_15

Scheme_16

Scheme_17

Scheme_18

Scheme_19

Scheme_20

Scheme_21

Scheme_22

Scheme_23

Scheme_24
(HNH endonuclease)

Scheme_25

Scheme_26
(ThyX-like thymidylate synthase)

Scheme_27

Scheme_28

Scheme_29

Scheme_30

Scheme_31

Scheme_32

Scheme_33

Scheme_34

Scheme_35
(nucleotidyl transferase)

Scheme_36
(glycosyltransferase)

Scheme_37
(glycosyltransferase)

Scheme_38 — tRNA
(tRNA-Thr(cgt))

Scheme_39
(HNH endonuclease)

Scheme_40
(glycosyltransferase)

Scheme_41

Scheme_42
(glycosyltransferase)

Scheme_43
(ribonucleotide reductase)

Scheme_44
(HNH endonuclease)

Scheme_45
(endolysin)

Scheme_46

Scheme_47

Scheme_48
(portal protein)

Scheme_49

Scheme_50
(capsid maturation protease)

Scheme_51
(major capsid protein)

Scheme_52

Scheme_53
(head-to-tail adaptor)

Scheme_54
(head-to-tail stopper)

Scheme_55

Scheme_56
(tail terminator)

Scheme_57
(major tail protein)

Scheme_58
(tail assembly chaperone)

Scheme_59

Scheme_60
(tape measure protein)

Scheme_61
(minor tail protein)

Scheme_62
(minor tail protein)

Scheme_63

Scheme_64
(minor tail protein)

Scheme_65
(minor tail protein)

Scheme_66

Scheme_67

Scheme_68

Scheme_69
(HNH endonuclease)

Scheme_70
(metallophosphatase)

Scheme_71

Scheme_72

Scheme_73
(helix-turn-helix DNA binding domain)

Scheme_74

Scheme_75

Scheme_76

Scheme_77
(DnaB-like dsDNA helicase)

Scheme_78

Scheme_79
(DNA primase)

Scheme_80
(SSB protein)

Scheme_81
(DnaE-like DNA polymerase III (alpha))

Scheme_82

Scheme_83
(MazG-like nucleotide pyrophosphohydrolase)

Scheme_84
(RecA-like DNA recombinase)

Scheme_85

Scheme_86
(Holliday junction resolvase)

Scheme_87

Scheme_88

Scheme_89
(Cas4 exonuclease)

Scheme_90

Scheme_91
(RuvC-like resolvase)

Scheme_92
(DprA-like ssDNA binding protein)

Scheme_93
(helix-turn-helix DNA binding domain)

Scheme_94
(thymidylate kinase)

Scheme_95

Scheme_96
(terminase, small subunit)

Scheme_97
(terminase, large subunit)

Scheme_98
(HNH endonuclease)

Scheme_99

Scheme_100 — tRNA
(tRNA-Gly(tcc))

Scheme_101 — tRNA
(tRNA-Gln(ctg))

Scheme_102 — tRNA
(tRNA-Trp(cca))

Scheme_103

Scheme_104 — tRNA
(tRNA-Pro(tgg))

Scheme_105 — tRNA
(tRNA-Pro(tgg))

Scheme_106
(nucleotidyl transferase)

Scheme_107
(FtsK-like DNA translocase)

Scheme_108

Scheme_109 — tRNA
(tRNA-Ile(tat))

Scheme_110

Scheme_111

Scheme_112 — tRNA
(tRNA-Ser(gga))

Scheme_113

Scheme_114 — tRNA
(tRNA-Ser(tga))

Scheme_115

Scheme_116

Scheme_117
(purple acid phosphatase)

Scheme_118

Scheme_119 — tRNA
(tRNA-Asp(gtc))

Scheme_120

Scheme_121

Scheme_122 — tRNA
(tRNA-Asp(gtc))

Scheme_123

Scheme_124

Scheme_125

Scheme_126
(Ro-like RNA binding protein)

Scheme_127

Scheme_128

Scheme_129

Scheme_130

Scheme_131

Scheme_132

Scheme_133

Scheme_134 — tRNA
(tRNA-Glu(ctc))

Scheme_135

Scheme_136 — tRNA
(tRNA-Glu(ttc))

Scheme_137 — tRNA
(tRNA-Val(tac))

Scheme_138 — tRNA
(tRNA-Leu(tag))

Scheme_139

Scheme_140 — tRNA
(tRNA-Leu(tag))

Scheme_141 — tRNA
(tRNA-Gly(gcc))

Scheme_142 — tRNA
(tRNA-Arg(tct))

Scheme_143

Scheme_144

Scheme_145

Scheme_146 — tRNA
(tRNA-Ala(tgc))

Scheme_147 — tRNA
(tRNA-Lys(ctt))

Scheme_148
(cysteine protease)

Scheme_149

Scheme_150

Scheme_151

Scheme_152 — tRNA
(tRNA-Asn(gtt))

Scheme_153

Scheme_154

Scheme_155 — tRNA
(tRNA-Asn(gtt))

Scheme_156
(membrane protein, Band-7 -like)

Scheme_157

Scheme_158

Scheme_159 — tRNA
(tRNA-Arg(cct))

Scheme_160

Scheme_161 — tRNA
(tRNA-Ile(gat))

Scheme_162 — tRNA
(tRNA-Ala(ggc))

Scheme_163 — tRNA
(tRNA-Lys(ctt))

Scheme_164 — tRNA
(tRNA-Lys(ttt))

Scheme_165 — tRNA
(tRNA-Arg(tcg))

Scheme_166

Scheme_167 — tRNA
(tRNA-Met(cat))

Scheme_168 — tRNA
(tRNA-Met(cat))

Scheme_169

Scheme_170

Scheme_171

Scheme_172 — tRNA
(tRNA-Tyr(gta))

Scheme_173 — tRNA
(tRNA-His(gtg))

Scheme_174 — tRNA
(tRNA-Phe(gaa))

Scheme_175

Scheme_176

Scheme_177 — tRNA
(tRNA-Cys(gca))

Scheme_178 — tRNA
(tRNA-Thr(tgt))

Scheme_179 — tRNA
(tRNA-Thr(ggt))

Scheme_180

Scheme_181 — tRNA
(tRNA-Arg(acg))

Scheme_182

Scheme_183
(DnaQ-like (DNA polymerase III subunit))

Scheme_184

Scheme_185 — tmRNA
(Tag peptide: ANSKFAFALAA*)

Scheme_186

Scheme_187
(peptidase)

Scheme_188

Scheme_189

Scheme_190
(acetyltransferase)

Scheme_191

Scheme_192 — tRNA
(tRNA-Ala(ggc))

Scheme_193

Scheme_194

Scheme_195

Scheme_196

Scheme_197
(RNA ligase)

Scheme_198

Scheme_199

Scheme_200
(polynucleotide kinase)

Scheme_201

Scheme_202 — tRNA
(tRNA-Leu(gag))

Scheme_203

Scheme_204

Scheme_205 — tRNA
(tRNA-Val(gac))

Scheme_206

Scheme_207

Scheme_208 — tRNA
(tRNA-Leu(caa))

Scheme_209

Scheme_210 — tRNA
(tRNA-Ser(gct))

Scheme_211

Scheme_212

Scheme_213

Scheme_214

Scheme_215

Scheme_216

Scheme_217

Scheme_218

Scheme_219

Scheme_220
(deoxycytidylate deaminase)

Scheme_221
(rIIA-like protein)

Scheme_222
(rIIB-like protein)

Scheme_223
(metallophosphatase)

Scheme_224

Scheme_225

Scheme_226
(WhiB family transcription factor)

Scheme_227

Scheme_228

Scheme_229

Scheme_230

Scheme_231

Scheme_232

Scheme_233

Scheme_234

Scheme_235

Scheme_236 — tRNA
(tRNA-Gln(ttg))

Scheme_237

Scheme_238

Scheme_239

Scheme_240

Scheme_241

Scheme_242

Scheme_243

Scheme_244
(thioredoxin)

Scheme_245

Scheme_246

Scheme_247

Scheme_248

Scheme_249

Scheme_250

Scheme_251

Scheme_252

Scheme_253

Scheme_254

Scheme_255

Scheme_256

Scheme_257

Scheme_258

Scheme_259

Scheme_260

Scheme_261
(Lsr2-like DNA bridging protein)

Scheme_262

Scheme_263
(ParB-like nuclease domain)

Scheme_264

Scheme_265
(ParB-like nuclease domain)

Scheme_266

Scheme_267

Scheme_268

Scheme_269

Scheme_270

Scheme_271

Scheme_272

Scheme_273

Scheme_274

Scheme_275

Scheme_276

Scheme_277
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload