| Detailed Information for Phage Supernova | |
| Discovery Information | |
| Isolation Host | Propionibacterium acnes ATCC 6919 |
| Found By | Team Host Busters |
| Year Found | 2016 |
| Location Found | Los Angeles, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 37°C |
| GPS Coordinates | 34.068900 N, 118.445200 W Map |
| Discovery Notes | Phage isolation was performed by Team Host Busters: Kailee Furtado, Rose Jarjoura, Neerja Vashist, and Larissa Wong. The phage was isolated by direct plating of nasal microcomedones obtained by a Biore pore strip from the nose of Rose Jarjoura. TAs: Rocky Ng and Andrew Lund UA: Lariska Theron Instructors: Dr. Frances Mercer, Dr. Krisanavane Reddi, and Dr. Jordan Moberg Parker. |
| Naming Notes | Team initially wanted to name it Blackhole, but it was taken. To satisfy their passion in astronomy, the team named it Supernova instead. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 29, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 3166 |
| Genome length (bp) | 29217 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | TCGTACGGCTT |
| GC Content | 54.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | BU |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Lysogeny Notes | Consistent clear plaque morphology does not provide evidence for lysogeny or pseudolysogeny. |
| Other Cluster Members |
Click to ViewAquarius ATCC29399BC ATCC29399BT Attacne BruceLethal Cota DrParker Enochoraptor Enoki Keiki Kubed Lauchelly Leviosa LilBandit MEAK Moyashi MrAK Ouroboros P1.1 P100.1 P100A P100D P101A P104A P104B P105 P106A P106C P106I P106L P106M P107A P107C P108C P14.4 P9.1 PA6 PAD20 PAS50 Pirate Procrass1 QueenBey Rileysaurus SKKY Solid Stormborn Supernova Wizzo |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Clear plaques, average diameter is 2.8 mm (SD=1.5) but range from 0.7-7.4 mm in diameter. |
| Morphotype | Siphoviridae |
| Number of Genes | 45 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSupernova_1 Supernova_2 Supernova_3 Supernova_4 Supernova_5 Supernova_6 Supernova_7 Supernova_8 Supernova_9 Supernova_10 Supernova_11 Supernova_12 Supernova_13 Supernova_14 Supernova_15 Supernova_16 Supernova_17 Supernova_18 Supernova_19 Supernova_20 Supernova_21 Supernova_22 Supernova_23 Supernova_24 Supernova_25 Supernova_26 Supernova_27 Supernova_28 Supernova_29 Supernova_30 Supernova_31 Supernova_32 Supernova_33 Supernova_34 Supernova_35 Supernova_36 Supernova_37 Supernova_38 Supernova_39 Supernova_40 Supernova_41 Supernova_42 Supernova_43 Supernova_44 Supernova_45 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF919533 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 28 |
| Pitt Freezer Box Grid# | E1 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
