Microbacterium phage Yuma
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Yuma
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByLaura Millage
Year Found2020
Location FoundAmes, IA United States
Finding InstitutionIowa State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates42.014329 N, 93.681729 W Map
Discovery NotesI took a sample of grass from right outside my apartment
Naming NotesYuma is the name of a town in Arizona, and also has some Russian origins. I mostly picked it because it sounded cool and was not already used.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 16, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage294
Genome length (bp)62758
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length3707 bp
GC Content61.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterED
SubclusterED2
Cluster Life CycleLytic
Lysogeny NotesBecause of the distinct clear plaques, I believe that this phage goes through the lytic cycle.
Other Cluster Members
Annotating InstitutionPurdue University
Annotation StatusIn GenBank
Plaque NotesThe plaques are medium size, round, and are very clear with defined edges.
Number of Genes120
Number of tRNAs3
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Yuma_1

Yuma_2

Yuma_3

Yuma_4

Yuma_5

Yuma_6

Yuma_7

Yuma_8

Yuma_9

Yuma_10

Yuma_11

Yuma_12

Yuma_13

Yuma_14

Yuma_15

Yuma_16

Yuma_17

Yuma_18

Yuma_19

Yuma_20

Yuma_21

Yuma_22

Yuma_23

Yuma_24

Yuma_25

Yuma_26 — tRNA
(tRNA-Asn(gtt))

Yuma_27 — tRNA
(tRNA-Gly(tcc))

Yuma_28 — tRNA
(tRNA-Thr(agt))

Yuma_29

Yuma_30

Yuma_31

Yuma_32

Yuma_33

Yuma_34
(NrdH-like glutaredoxin)

Yuma_35
(phosphatase)

Yuma_36
(HNH endonuclease)

Yuma_37

Yuma_38
(terminase)

Yuma_39
(portal protein)

Yuma_40
(capsid maturation protease)

Yuma_41

Yuma_42
(major capsid protein)

Yuma_43

Yuma_44

Yuma_45

Yuma_46
(glycoside hydrolase)

Yuma_47
(head-to-tail stopper)

Yuma_48

Yuma_49
(tail terminator)

Yuma_50

Yuma_51

Yuma_52
(major tail protein)

Yuma_53
(tail assembly chaperone)

Yuma_54
(tail assembly chaperone)

Yuma_55
(tape measure protein)

Yuma_56
(minor tail protein)

Yuma_57
(minor tail protein)

Yuma_58

Yuma_59

Yuma_60

Yuma_61
(endolysin)

Yuma_62
(tail needle protein)

Yuma_63

Yuma_64
(RuvC-like resolvase)

Yuma_65

Yuma_66

Yuma_67

Yuma_68

Yuma_69
(DNA primase/polymerase)

Yuma_70

Yuma_71

Yuma_72

Yuma_73
(exonuclease)

Yuma_74

Yuma_75

Yuma_76
(exonuclease)

Yuma_77

Yuma_78

Yuma_79
(RNA ligase)

Yuma_80
(polynucleotide kinase)

Yuma_81

Yuma_82

Yuma_83
(DNA helicase)

Yuma_84

Yuma_85

Yuma_86

Yuma_87

Yuma_88

Yuma_89

Yuma_90

Yuma_91

Yuma_92

Yuma_93

Yuma_94

Yuma_95

Yuma_96

Yuma_97

Yuma_98

Yuma_99

Yuma_100
(DNA binding domain protein)

Yuma_101

Yuma_102

Yuma_103

Yuma_104

Yuma_105

Yuma_106

Yuma_107

Yuma_108

Yuma_109

Yuma_110

Yuma_111

Yuma_112

Yuma_113

Yuma_114

Yuma_115

Yuma_116

Yuma_117

Yuma_118

Yuma_119

Yuma_120

Yuma_121

Yuma_122

Yuma_123

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON970603
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 129
Pitt Freezer Box Grid# A2
Available Files
EM PictureDownload
GenBank File for PhameratorDownload