Rhodococcus phage Finch
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Detailed Information for Phage Finch
Discovery Information
Isolation HostRhodococcus erythropolis RIA 643
Found ByKrista Haglund
Year Found2016
Location FoundClam Falls, WI USA
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates45.0 N, 92.0 W Map
Discovery NotesThis soil was collected from a soy bean field in Frederic, Wisconsin. The soil was moist, loose, sandy, and the top layer had a layer of moss. The soil depth was 38 mm deep. It was collected on September 10, 2016. We do not believe that we are part of a cluster because we did not receive results from the PCR gel.
Naming NotesOriginally we wanted to name the phage AtticusFinch from the book to Kill a Mocking Bird, but the name was copyrighted so we shortened it to Finch.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 23, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage847
Genome length (bp)138896
Character of genome endsCircularly Permuted
GC Content63.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThe plaques were extremely small so we were unable to measure the size. But they were smaller than the period at the end of this sentence. The plaques were round, uniform, and clear.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Finch_1
(terminase)

Finch_2

Finch_3

Finch_4

Finch_5
(RuvC resolvase)

Finch_6

Finch_7

Finch_8

Finch_9

Finch_10

Finch_11

Finch_12

Finch_13

Finch_14

Finch_15
(portal protein)

Finch_16

Finch_17

Finch_18

Finch_19
(major capsid protein)

Finch_20

Finch_21

Finch_22

Finch_23

Finch_24

Finch_25

Finch_26

Finch_27

Finch_28

Finch_29
(hydrolase)

Finch_30

Finch_31

Finch_32

Finch_33

Finch_34

Finch_35

Finch_36

Finch_37

Finch_38

Finch_39

Finch_40

Finch_41

Finch_42
(tail sheath protein)

Finch_43

Finch_44

Finch_45

Finch_46
(tale assembly chaperone protein)

Finch_47
(tail assembly chaperone protein)

Finch_48
(tape measure protein)

Finch_49

Finch_50

Finch_51

Finch_52

Finch_53

Finch_54

Finch_55
(baseplate wedge protein)

Finch_56
(baseplate J protein)

Finch_57
(HNH endonuclease)

Finch_58

Finch_59

Finch_60
(minor tail protein)

Finch_61
(DNA helicase)

Finch_62

Finch_63

Finch_64

Finch_65

Finch_66

Finch_67
(aminotransferase)

Finch_68

Finch_69

Finch_70
(DnaC helicase loader)

Finch_71
(DnaB dsDNA helicase)

Finch_72
(phosphatase)

Finch_73
(DNA primase)

Finch_74

Finch_75

Finch_76
(ssDNA binding protein)

Finch_77
(DnaE DNA polymerase III (alpha))

Finch_78
(RecA DNA recombinase)

Finch_79

Finch_80
(Holliday junction resolvase)

Finch_81
(exonuclease)

Finch_82
(HNH endonuclease)

Finch_83

Finch_84
(RNA polymease sigma factor)

Finch_85

Finch_86
(glycosyl hydrolase)

Finch_87

Finch_88
(membrane protein)

Finch_89

Finch_90

Finch_91

Finch_92

Finch_93

Finch_94

Finch_95

Finch_96

Finch_97

Finch_98

Finch_99

Finch_100

Finch_101

Finch_102

Finch_103

Finch_104

Finch_105

Finch_106

Finch_107

Finch_108

Finch_109

Finch_110

Finch_111

Finch_112

Finch_113

Finch_114

Finch_115

Finch_116

Finch_117

Finch_118

Finch_119

Finch_120

Finch_121

Finch_122

Finch_123

Finch_124

Finch_125

Finch_126
(helix-turn-helix DNA binding domain)

Finch_127

Finch_128

Finch_129

Finch_130

Finch_131

Finch_132

Finch_133

Finch_134

Finch_135

Finch_136

Finch_137
(membrane protein)

Finch_138

Finch_139

Finch_140

Finch_141

Finch_142

Finch_143
(helix-turn-helix DNA binding domain)

Finch_144

Finch_145

Finch_146

Finch_147

Finch_148

Finch_149
(helix-turn-helix DNA binding domain)

Finch_150

Finch_151

Finch_152

Finch_153

Finch_154
(HNH endonuclease)

Finch_155
(HNH endonuclease)

Finch_156

Finch_157

Finch_158

Finch_159

Finch_160

Finch_161

Finch_162

Finch_163

Finch_164

Finch_165

Finch_166

Finch_167

Finch_168

Finch_169

Finch_170

Finch_171

Finch_172

Finch_173

Finch_174

Finch_175

Finch_176

Finch_177

Finch_178
(MazG nucleotide pyrophosphohydrolase)

Finch_179

Finch_180

Finch_181

Finch_182

Finch_183

Finch_184

Finch_185

Finch_186
(HNH endonuclease)

Finch_187

Finch_188

Finch_189

Finch_190

Finch_191

Finch_192

Finch_193

Finch_194

Finch_195

Finch_196

Finch_197

Finch_198

Finch_199

Finch_200

Finch_201

Finch_202
(lysin B)

Finch_203

Finch_204

Finch_205

Finch_206

Finch_207

Finch_208

Finch_209

Finch_210
(ParB-like nuclease domain)

Finch_211
(queuine tRNA-ribosyltransferase)

Finch_212
(queosine biosynthesis protein, QueC-like)

Finch_213
(queosine biosynthesis protein, QueD-like)

Finch_214
(queosine biosynthesis protein, QueE-like)

Finch_215
(GTP cyclohydrolase I)

Finch_216

Finch_217
(helix-turn-helix DNA binding domain)

Finch_218

Finch_219

Finch_220

Finch_221
(RNA ligase)

Finch_222

Finch_223

Finch_224

Finch_225

Finch_226

Finch_227
(lysin A)

Finch_228
(holin)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG962366
Refseq NumberNone yet
Available Files
EM PictureDownload
GenBank File for PhameratorDownload