Microbacterium phage ValentiniPuff
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Detailed Information for Phage ValentiniPuff
Discovery Information
Isolation HostMicrobacterium paraoxydans NRRL B-14843
Found ByKylie Myers
Year Found2017
Location FoundFairchild, WI United States
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature28°C
GPS Coordinates44.637839 N, 91.000214 W Map
Discovery Notesfound in grassy area where cows eat
soil condition: little moist, clumpy, and dark
Naming NotesNamed after my favorite saltwater fish a cute Valentini puffer fish
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 8, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage898
Genome length (bp)62517
Character of genome endsCircularly Permuted
End Determination Notessequence was cut at the first place upstream of the terminase
GC Content67.4%
Sequencing NotesThe assembly contains some mixed reads that align to the phage sequence and some other sequence (possible host DNA). The assembly also contains some contigs that blast to Microbacterium plasmid.
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusBeing Annotated (Expected completion by 9/8/2018)
Plaque Notessize and shape: uniform
description: turbid with halo fading
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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ValentiniPuff_1

ValentiniPuff_2

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ValentiniPuff_6

ValentiniPuff_7

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ValentiniPuff_14

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ValentiniPuff_35

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ValentiniPuff_48

ValentiniPuff_49

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ValentiniPuff_62

ValentiniPuff_63

ValentiniPuff_64

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ValentiniPuff_66

ValentiniPuff_67

ValentiniPuff_68

ValentiniPuff_69

ValentiniPuff_70

ValentiniPuff_71

ValentiniPuff_72

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ValentiniPuff_76

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ValentiniPuff_86

ValentiniPuff_87

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ValentiniPuff_89

ValentiniPuff_90

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ValentiniPuff_98

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ValentiniPuff_100

ValentiniPuff_101

ValentiniPuff_102

ValentiniPuff_103

ValentiniPuff_104

ValentiniPuff_105

ValentiniPuff_106

ValentiniPuff_107

ValentiniPuff_108

ValentiniPuff_109

ValentiniPuff_110

ValentiniPuff_111

ValentiniPuff_112

Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 70
Pitt Freezer Box Grid# A1
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload