Arthrobacter phage Babushka
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Detailed Information for Phage Babushka
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Found ByLeah Joby, Ramanpreet Kaur
Year Found2024
Location FoundNew York, NY U.S.A
Finding InstitutionNew York Institute of Technology
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.73135 N, 73.72391 W Map
Discovery NotesCollected soil from home backyard.
Naming NotesIt was a unique and distinct enough name for the both of us to remember.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage3677
Genome length (bp)38380
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceGAGTTGCCGGCA
GC Content66.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAS
SubclusterAS3
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionNew York Institute of Technology
Annotation StatusQC Complete
Plaque NotesThe plaques are small and round with clear edges, often forming small clusters.
MorphotypeSiphoviridae
Number of Genes66
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Babushka_1

Babushka_2
(terminase)

Babushka_3
(RNA binding protein)

Babushka_4
(portal protein)

Babushka_5
(capsid maturation protease)

Babushka_6
(major capsid protein)

Babushka_7

Babushka_8
(head-to-tail adaptor)

Babushka_9
(head-to-tail stopper)

Babushka_10

Babushka_11
(tail terminator)

Babushka_12
(major tail protein)

Babushka_13
(tail assembly chaperone)

Babushka_14
(tail assembly chaperone)

Babushka_15
(tape measure protein)

Babushka_16
(minor tail protein)

Babushka_17
(minor tail protein)

Babushka_18
(minor tail protein)

Babushka_19
(minor tail protein)

Babushka_20

Babushka_21

Babushka_22
(endolysin)

Babushka_23
(holin)

Babushka_24

Babushka_25

Babushka_26

Babushka_27
(HNH endonuclease)

Babushka_28
(helix-turn-helix DNA binding domain)

Babushka_29

Babushka_30

Babushka_31

Babushka_32

Babushka_33
(tyrosine integrase)

Babushka_34
(immunity repressor)

Babushka_35
(helix-turn-helix DNA binding domain)

Babushka_36
(excise)

Babushka_37
(RecE-like exonuclease)

Babushka_38
(RecT-like DNA pairing protein)

Babushka_39
(DNA methyltransferase)

Babushka_40
(DNA methyltransferase)

Babushka_41
(helix-turn-helix DNA binding domain)

Babushka_42
(RusA-like resolvase)

Babushka_43
(helix-turn-helix DNA binding domain)

Babushka_44
(DNA methyltransferase)

Babushka_45

Babushka_46

Babushka_47

Babushka_48

Babushka_49

Babushka_50

Babushka_51
(nucleoside deoxyribosyltransferase)

Babushka_52
(SSB protein)

Babushka_53
(NucT-like nuclease)

Babushka_54

Babushka_55

Babushka_56

Babushka_57

Babushka_58

Babushka_59

Babushka_60

Babushka_61

Babushka_62

Babushka_63

Babushka_64

Babushka_65
(helix-turn-helix DNA binding domain)

Babushka_66
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 212
Pitt Freezer Box Grid# D5
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload