Detailed Information for Phage Caprice |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Aryan Narayan |
Year Found | 2022 |
Location Found | Providence, RI United States of America |
Finding Institution | Brown University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 17°C |
GPS Coordinates | 41.8239 N, 71.3969 W Map |
Discovery Notes | Was found in a compost bin at the Brown University Community Garden. Direct isolation. |
Naming Notes | In performing enzyme restriction analysis and PCR analysis, results were not always consistent with each other. Owing to the phage's capriciousness, I've named it Caprice. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 20, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 597 |
Genome length (bp) | 64613 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | GCGCGCAGCGC |
GC Content | 63.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | S |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | Brown University |
Annotation Status | Overdue (Expected completion by 5/1/2023) |
Plaque Notes | Plaques are quite small () and consistent in their size. Plaques are quite clear. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
Available Files |
Plaque Picture | Download |