The Actinobacteriophage Database

Mycobacterium phage RedRaider77

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Detailed Information for Phage RedRaider77
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Former names	TrumpTrain
Found By	Paxton DeHaan
Year Found	2018
Location Found	Colorado Springs, CO USA
Finding Institution	Northwestern College
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	37°C
GPS Coordinates	38.885732 N, 104.707011 W Map
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Sep 25, 2018
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	249
Genome length (bp)	64827
Character of genome ends	3' Sticky Overhang
Overhang Length	11 bases
Overhang Sequence	GCGCGCAGCGC
GC Content	63.4%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	S
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Beelzebub Blackbeetle Caprice Clarkson Corazon FeliMaine Gattaca GoongGoong Huphlepuff JoieB Lilbit LittleLaf Marvin MosMoris Poise Pringar Raela RedRaider77 Tesla VasuNzinga
Annotating Institution	Northwestern College
Annotation Status	In GenBank
Plaque Notes	Plaques appear to be circular with a clear middle and foggy outside ring.
Morphotype	Siphoviridae
Number of Genes	115
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View RedRaider77_1 RedRaider77_2 RedRaider77_3 RedRaider77_4 RedRaider77_5 RedRaider77_6 RedRaider77_7 RedRaider77_8 RedRaider77_9 RedRaider77_10 RedRaider77_11 RedRaider77_12 RedRaider77_13 RedRaider77_14 RedRaider77_15 RedRaider77_16 RedRaider77_17 RedRaider77_18 RedRaider77_19 RedRaider77_20 RedRaider77_21 RedRaider77_22 RedRaider77_23 RedRaider77_24 (helix-turn-helix DNA binding protein) RedRaider77_25 RedRaider77_26 RedRaider77_27 RedRaider77_28 RedRaider77_29 RedRaider77_30 RedRaider77_31 RedRaider77_32 (DNA methyltransferase) RedRaider77_33 RedRaider77_34 RedRaider77_35 (terminase large subunit) RedRaider77_36 (portal protein) RedRaider77_37 (MuF-like minor capsid protein) RedRaider77_38 (scaffolding protein) RedRaider77_39 (capsid decoration protein) RedRaider77_40 (major capsid protein) RedRaider77_41 (head-to-tail adaptor) RedRaider77_42 (head-to-tail stopper) RedRaider77_43 RedRaider77_44 (tail terminator) RedRaider77_45 (major tail protein) RedRaider77_46 (tail assembly chaperone) RedRaider77_47 (tail assembly chaperone) RedRaider77_48 (tape measure protein) RedRaider77_49 (minor tail protein) RedRaider77_50 (minor tail protein) RedRaider77_51 RedRaider77_52 RedRaider77_53 (lysin A) RedRaider77_54 RedRaider77_55 (lysin B) RedRaider77_56 (holin) RedRaider77_57 RedRaider77_58 RedRaider77_59 RedRaider77_60 (hydrolase) RedRaider77_61 (helix-turn-helix DNA binding protein) RedRaider77_62 RedRaider77_63 RedRaider77_64 (helix-turn-helix DNA binding protein) RedRaider77_65 (Cas4 family exonuclease) RedRaider77_66 RedRaider77_67 RedRaider77_68 (HNH endonuclease) RedRaider77_69 RedRaider77_70 RedRaider77_71 RedRaider77_72 RedRaider77_73 (DprA-like DNA processing chain A) RedRaider77_74 RedRaider77_75 RedRaider77_76 RedRaider77_77 RedRaider77_78 RedRaider77_79 RedRaider77_80 RedRaider77_81 RedRaider77_82 RedRaider77_83 RedRaider77_84 (O-methyltransferase) RedRaider77_85 (methyltransferase) RedRaider77_86 (glycosyltransferase) RedRaider77_87 RedRaider77_88 (glycosyltransferase) RedRaider77_89 RedRaider77_90 RedRaider77_91 RedRaider77_92 (HNH endonuclease) RedRaider77_93 (minor tail protein) RedRaider77_94 (minor tail protein) RedRaider77_95 RedRaider77_96 RedRaider77_97 RedRaider77_98 RedRaider77_99 RedRaider77_100 RedRaider77_101 RedRaider77_102 RedRaider77_103 RedRaider77_104 RedRaider77_105 RedRaider77_106 RedRaider77_107 RedRaider77_108 RedRaider77_109 RedRaider77_110 RedRaider77_111 RedRaider77_112 (glutamine amidotransferase domain protein) RedRaider77_113 (glutamine amidotransferase domain protein) RedRaider77_114 RedRaider77_115
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MK305892
Refseq Number	None yet
Published in Paper	Sevcik et al 2022, Microbiology Resource Announcements: Complete Genome Sequences of Cluster S Mycobacteriophages Beelzebub, Raela, and RedRaider77
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	73
Pitt Freezer Box Grid#	F4
Available Files
Plaque Picture	Download
GenBank File for Phamerator	Download

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