Gordonia phage Lutum
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Detailed Information for Phage Lutum
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJerome Henry
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.446093 N, 79.952797 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 13, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage238
Genome length (bp)54534
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCGGGGCAT
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
SubclusterDN1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes104
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Lutum_1
(HNH endonuclease)

Lutum_2

Lutum_3
(terminase)

Lutum_4
(portal protein)

Lutum_5
(MuF-like minor capsid protein)

Lutum_6
(scaffolding protein)

Lutum_7
(major capsid protein)

Lutum_8

Lutum_9
(head-to-tail adaptor)

Lutum_10
(head-to-tail stopper)

Lutum_11

Lutum_12
(tail terminator)

Lutum_13
(major tail protein)

Lutum_14

Lutum_15
(tail assembly chaperone)

Lutum_16
(tail assembly chaperone)

Lutum_17

Lutum_18
(tape measure protein)

Lutum_19
(minor tail protein)

Lutum_20
(minor tail protein)

Lutum_21

Lutum_22
(lysin A, L-Ala-D-Glu peptidase domain)

Lutum_23
(lysin A, glycosyl hydrolase domain)

Lutum_24
(holin)

Lutum_25

Lutum_26

Lutum_27

Lutum_28
(lysin B)

Lutum_29

Lutum_30

Lutum_31

Lutum_32

Lutum_33

Lutum_34

Lutum_35
(minor tail protein)

Lutum_36

Lutum_37

Lutum_38

Lutum_39
(helix-turn-helix DNA binding protein)

Lutum_40

Lutum_41

Lutum_42

Lutum_43

Lutum_44
(helix-turn-helix DNA binding protein)

Lutum_45

Lutum_46

Lutum_47

Lutum_48

Lutum_49

Lutum_50
(tyrosine integrase)

Lutum_51
(HNH endonuclease)

Lutum_52
(helix-turn-helix DNA binding protein)

Lutum_53

Lutum_54
(helix-turn-helix DNA binding protein)

Lutum_55

Lutum_56
(immunity repressor)

Lutum_57
(Cro protein)

Lutum_58

Lutum_59
(helix-turn-helix DNA binding protein)

Lutum_60

Lutum_61
(antirepressor)

Lutum_62

Lutum_63

Lutum_64
(excise)

Lutum_65

Lutum_66

Lutum_67

Lutum_68

Lutum_69
(WhiB family transcription factor)

Lutum_70

Lutum_71

Lutum_72
(Cas4 family exonuclease)

Lutum_73

Lutum_74

Lutum_75

Lutum_76

Lutum_77

Lutum_78

Lutum_79

Lutum_80

Lutum_81

Lutum_82

Lutum_83

Lutum_84

Lutum_85

Lutum_86

Lutum_87

Lutum_88

Lutum_89

Lutum_90
(helicase loader)

Lutum_91
(RusA-like resolvase)

Lutum_92

Lutum_93

Lutum_94

Lutum_95

Lutum_96

Lutum_97

Lutum_98

Lutum_99

Lutum_100

Lutum_101

Lutum_102

Lutum_103

Lutum_104

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK814752
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 42
Pitt Freezer Box Grid# F2
Available Files
GenBank File for PhameratorDownload