| Detailed Information for Phage Patos | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Amalia Nunes, Elias Morales, Audrey DeGraw |
| Year Found | 2021 |
| Location Found | Albany, NY United States of America |
| Finding Institution | Albany College of Pharmacy and Health Sciences |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 19°C |
| GPS Coordinates | 42.644879 N, 73.76418 W Map |
| Discovery Notes | We found this phage in a construction site in Lincoln Park, Albany. It was found on the surface of tire tracks. The sample was difficult to remove as it was solidified and stuck with other dirt that was around. This sample was taken around an inch deep. It was 18.89 degrees Celsius when taken. |
| Naming Notes | Patos is ducks in Portuguese and Spanish which is two of the languages that two of the group members speak. This name is based on the fact that a sample from a duck pond contaminated the the majority of our samples during our research. We chose this name based on this memorable experience in our research. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 9, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 4358 |
| Genome length (bp) | 68847 |
| Character of genome ends | Circularly Permuted |
| GC Content | 58.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DV |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to ViewAlephilan Alyssamiracle Apeppi Avian BirthdayBoy DaviePasture DoobyDoo DumpTruck Erutan Fulcrum Genamy16 Gibbin GOATification GretelLyn Jalebi Jamemuya19 Lambo Lila22 LuckyLeo Mima20 MoiGyank NorManre NovaSharks OtterstedtS21 ParvusTarda Patos Ranch Rumi Sadboi Sampudon Tillicus Wojtek Xenia2 Yikes Zany |
| Annotating Institution | Albany College of Pharmacy and Health Sciences |
| Annotation Status | In GenBank |
| Plaque Notes | The titer of the phage is 1.5*10^12 pfu/ml. It is a clear plaque. |
| Morphotype | Siphoviridae |
| Number of Genes | 102 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewPatos_1 Patos_2 Patos_3 Patos_4 Patos_5 Patos_6 Patos_7 Patos_8 Patos_9 Patos_10 Patos_11 Patos_12 Patos_13 Patos_14 Patos_15 Patos_16 Patos_17 Patos_18 Patos_19 Patos_20 Patos_21 Patos_22 Patos_23 Patos_24 Patos_25 Patos_26 Patos_27 Patos_28 Patos_29 Patos_30 Patos_31 Patos_32 Patos_33 Patos_34 Patos_35 Patos_36 Patos_37 Patos_38 Patos_39 Patos_40 Patos_41 Patos_42 Patos_43 Patos_44 Patos_45 Patos_46 Patos_47 Patos_48 Patos_49 Patos_50 Patos_51 Patos_52 Patos_53 Patos_54 Patos_55 Patos_56 Patos_57 Patos_58 Patos_59 Patos_60 Patos_61 Patos_62 Patos_63 Patos_64 Patos_65 Patos_66 Patos_67 Patos_68 Patos_69 Patos_70 Patos_71 Patos_72 Patos_73 Patos_74 Patos_75 Patos_76 Patos_77 Patos_78 Patos_79 Patos_80 Patos_81 Patos_82 Patos_83 Patos_84 Patos_85 Patos_86 Patos_87 Patos_88 Patos_89 Patos_90 Patos_91 Patos_92 Patos_93 Patos_94 Patos_95 Patos_96 Patos_97 Patos_98 Patos_99 Patos_100 Patos_101 Patos_102 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OP172876 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 136 |
| Pitt Freezer Box Grid# | D12 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
