| Detailed Information for Phage DoobyDoo | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Autumn Grantz |
| Year Found | 2023 |
| Location Found | New Albany, IN United States of America |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 26°C |
| GPS Coordinates | 38.35806 N, 85.8027 W Map |
| Discovery Notes | The soil sample was collected from a flower garden. The soil was dark brown and moist and dug about 2 in. from the ground. Soil was collected on 9/11/2023. |
| Naming Notes | Ibrahim Abdulrehman and Preston Penny isolated DoobyDoo. We were inspired by the American animated cartoon series Scooby-Doo, with its central theme of investigation, and named our phage after the main protagonist Scoobert “Scooby” Doo. Much like on the show, the Mystery Incorporated gang is always asking, "Scooby Doo, where are you?" There was a struggle to isolate a phage sample successfully. It had us asking, "Phage sample, where are you?" Thus, the name DoobyDoo was created! |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 2, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 773 |
| Genome length (bp) | 66343 |
| Character of genome ends | Circularly Permuted |
| GC Content | 58.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DV |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | Being Annotated (Expected completion by 5/1/2024) |
| Plaque Notes | Our phage creates approximately 1 millimeter-in diameter plaques. The plaques appear distinctly cleared on agar plates and have defined edges. They have an irregular circular shape. |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDoobyDoo_Draft_1 DoobyDoo_Draft_2 DoobyDoo_Draft_3 DoobyDoo_Draft_4 DoobyDoo_Draft_5 DoobyDoo_Draft_6 DoobyDoo_Draft_7 DoobyDoo_Draft_8 DoobyDoo_Draft_9 DoobyDoo_Draft_10 DoobyDoo_Draft_11 DoobyDoo_Draft_12 DoobyDoo_Draft_13 DoobyDoo_Draft_14 DoobyDoo_Draft_15 DoobyDoo_Draft_16 DoobyDoo_Draft_17 DoobyDoo_Draft_18 DoobyDoo_Draft_19 DoobyDoo_Draft_20 DoobyDoo_Draft_21 DoobyDoo_Draft_22 DoobyDoo_Draft_23 DoobyDoo_Draft_24 DoobyDoo_Draft_25 DoobyDoo_Draft_26 DoobyDoo_Draft_27 DoobyDoo_Draft_28 DoobyDoo_Draft_29 DoobyDoo_Draft_30 DoobyDoo_Draft_31 DoobyDoo_Draft_32 DoobyDoo_Draft_33 DoobyDoo_Draft_34 DoobyDoo_Draft_35 DoobyDoo_Draft_36 DoobyDoo_Draft_37 DoobyDoo_Draft_38 DoobyDoo_Draft_39 DoobyDoo_Draft_40 DoobyDoo_Draft_41 DoobyDoo_Draft_42 DoobyDoo_Draft_43 DoobyDoo_Draft_44 DoobyDoo_Draft_45 DoobyDoo_Draft_46 DoobyDoo_Draft_47 DoobyDoo_Draft_48 DoobyDoo_Draft_49 DoobyDoo_Draft_50 DoobyDoo_Draft_51 DoobyDoo_Draft_52 DoobyDoo_Draft_53 DoobyDoo_Draft_54 DoobyDoo_Draft_55 DoobyDoo_Draft_56 DoobyDoo_Draft_57 DoobyDoo_Draft_58 DoobyDoo_Draft_59 DoobyDoo_Draft_60 DoobyDoo_Draft_61 DoobyDoo_Draft_62 DoobyDoo_Draft_63 DoobyDoo_Draft_64 DoobyDoo_Draft_65 DoobyDoo_Draft_66 DoobyDoo_Draft_67 DoobyDoo_Draft_68 DoobyDoo_Draft_69 DoobyDoo_Draft_70 DoobyDoo_Draft_71 DoobyDoo_Draft_72 DoobyDoo_Draft_73 DoobyDoo_Draft_74 DoobyDoo_Draft_75 DoobyDoo_Draft_76 DoobyDoo_Draft_77 DoobyDoo_Draft_78 DoobyDoo_Draft_79 DoobyDoo_Draft_80 DoobyDoo_Draft_81 DoobyDoo_Draft_82 DoobyDoo_Draft_83 DoobyDoo_Draft_84 DoobyDoo_Draft_85 DoobyDoo_Draft_86 DoobyDoo_Draft_87 DoobyDoo_Draft_88 DoobyDoo_Draft_89 DoobyDoo_Draft_90 DoobyDoo_Draft_91 DoobyDoo_Draft_92 DoobyDoo_Draft_93 DoobyDoo_Draft_94 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 184 |
| Pitt Freezer Box Grid# | A2 |