| Detailed Information for Phage Xenia2 |
| Discovery Information |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Carol Agaiby |
| Year Found | 2023 |
| Location Found | Tampa, FL United States |
| Finding Institution | University of South Florida |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 28.066944 N, 82.414722 W Map |
| Discovery Notes | Found in a grassy area near a tree
Soil was wet, dark and rich
Soil was not sandy |
| Naming Notes | I chose the name Xenia because it is a Greek word meaning "hospitality" and signifies a long friendship. This was my first research project and my phage and I have been in it together all throughout my journey which is why I thought that friendship would be a perfect way to describe my phage. We will be friends forever! |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 6, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 921 |
| Genome length (bp) | 68135 |
| Character of genome ends | Circularly Permuted |
| GC Content | 57.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DV |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Plaque Notes | My phage creates both medium and large-sized plaques with jagged edges |
| Morphotype | Siphoviridae |
| Number of Genes | 98 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PP725409 |
| Refseq Number | None yet |
| Published in Paper | Agaiby et al 2024, Microbiology Resource Announcements: Genome sequence of Xenia2 a DV cluster phage that infects Gordonia rubripertincta |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
172 |
| Pitt Freezer Box Grid# |
H2 |
| Available Files |
| GenBank File for Phamerator | Download |