| Detailed Information for Phage DS6A | |
| Discovery Information | |
| Isolation Host | Mycobacterium tuberculosis H37Rv |
| Found By | W. B. Redmond |
| Year Found | 1960 |
| Location Found | Unavailable |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.444800 N, 79.952700 W Map |
| Discovery Notes | Original Citation: W.B. Redmond and J.C. Cater "A bacteriophage specific for Mycobacterium tuberculosis, varieties hominis and bovis" Amer. Rev. Resp. Dis. 82:781-786 (1960). Sample obtained from William R. Jacobs lab for sequencing. Originally isolated from stockyard soil. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Sep 24, 2010 |
| Genome length (bp) | 60588 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 12 bases |
| Overhang Sequence | CGAGGCCGACAT |
| GC Content | 68.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | Singleton |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to ViewArV2 Attoomi Ball Barebow Cantare ChewyVIII Chymera CyranoPS DillyDally DocB7 DS6A E3 Elener EmiRose Eyre Finch Finkle Footloose FuzzBuster GAL1 Gilgamesh GMA1 GMA4 Gudmit Ibantik Jace JeanGrey Juicebox Kithara Kromp Kumao LilSpotty LuckyBarnes Lukepolites Magritte Min1 MooMoo mu16 OnionKnight P3MA PensacolaC28 phiAsp2 phiSAV Phroglets Pine5 Ponzi pZL12 REQ2 REQ3 Reynauld RomansRevenge Root RRH1 Samy Shambre1 Shocker Shrew Sleepyhead Spartoi Sunfish TinyDot TJE1 Tonitrus TPA2 TPA4 Trogglehumper TurkishDelight ValentiniPuff Whack Wollypog Yappy |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Large plaques (see pic.). Infects all and only mycobacteria of the TB complex (M. tuberculosis, M. bovis, BCG, M. africanum, M. microti, etc.). The Hatfull lab has tested the lysate on M. smegmatis and confirmed that it does not infect it. |
| Number of Genes | 97 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDS6A_1 DS6A_2 DS6A_3 DS6A_4 DS6A_5 DS6A_6 DS6A_7 DS6A_8 DS6A_9 DS6A_10 DS6A_11 DS6A_12 DS6A_13 DS6A_14 DS6A_15 DS6A_16 DS6A_17 DS6A_18 DS6A_19 DS6A_20 DS6A_21 DS6A_22 DS6A_23 DS6A_24 DS6A_25 DS6A_26 DS6A_27 DS6A_28 DS6A_29 DS6A_30 DS6A_31 DS6A_32 DS6A_33 DS6A_34 DS6A_35 DS6A_36 DS6A_37 DS6A_38 DS6A_39 DS6A_40 DS6A_41 DS6A_42 DS6A_43 DS6A_44 DS6A_45 DS6A_46 DS6A_47 DS6A_48 DS6A_49 DS6A_50 DS6A_51 DS6A_52 DS6A_53 DS6A_54 DS6A_55 DS6A_56 DS6A_57 DS6A_58 DS6A_59 DS6A_60 DS6A_61 DS6A_62 DS6A_63 DS6A_64 DS6A_65 DS6A_66 DS6A_67 DS6A_68 DS6A_69 DS6A_70 DS6A_71 DS6A_72 DS6A_73 DS6A_74 DS6A_75 DS6A_76 DS6A_77 DS6A_78 DS6A_79 DS6A_80 DS6A_81 DS6A_82 DS6A_83 DS6A_84 DS6A_85 DS6A_86 DS6A_87 DS6A_88 DS6A_89 DS6A_90 DS6A_91 DS6A_92 DS6A_93 DS6A_94 DS6A_95 DS6A_96 DS6A_97 |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN698994 |
| Refseq Number | NC_023744 |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 1 |
| Pitt Freezer Box Grid# | F12 |
| Available Files | |
| Plaque Picture | Download |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
