Microbacterium phage TeddyBear
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Detailed Information for Phage TeddyBear
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224 SEA
Found ByAnn-Catherine Stanton
Year Found2016
Location FoundPittsburgh, PA United States of America
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.4464 N, 79.9544 W Map
Discovery NotesFound in soil outside Langely and Crawford Hall. The soil was in hard clumps that were dark gray-brown.
Naming NotesI don't have a particular reason for naming this phage TeddyBear.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 16, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3701
Genome length (bp)41555
Character of genome endsCircularly Permuted
GC Content63.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEA
SubclusterEA1
Cluster Life CycleLytic
Lysogeny NotesGrowth of mesas and lysogeny efficiency using phage-seeded plates was attempted with this phage by Audrey Jonas. This phage does not make a lysogen.
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques have different morphologies. The plaques are typically slightly turbid and about 1 mm in diameter, clear and about 2 mm in diameter, or clear and about 4 mm in diameter. If they are allowed to grow up for more than a day, a large halo will form around the plaques. The halos can be as large as 1.75 cm in diameter, if left to grow up for a several days.
MorphotypeSiphoviridae
Number of Genes63
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH045564
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 5
Pitt Freezer Box Grid# B8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload