Mycobacterium phage Yoshi
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Detailed Information for Phage Yoshi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByR. Dillon Davis
Year Found2009
Location FoundMonroe, LA USA
Finding InstitutionUniversity of Louisiana at Monroe
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates32.609697 N, 92.377981 W Map
Discovery NotesSoil, depth 3 cm, in a manure/compost pile.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 17, 2011
Sequencing FacilityJoint Genomics Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)58714
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
GC Content61.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF2
Cluster Life CycleTemperate
Other Cluster Members

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Soul22 (None)

Akhila (F1)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Awesomesauce (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sandalphon (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

Wachhund (F1)

Wee (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesLytic/lysogenic
MorphotypeSiphoviridae
Number of Genes116
Has been Phamerated?Yes
Gene List

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Yoshi_1
(HNH endonuclease)

Yoshi_2

Yoshi_3
(terminase)

Yoshi_4
(portal protein)

Yoshi_5
(MuF-like minor capsid protein)

Yoshi_6
(scaffolding protein)

Yoshi_7
(major capsid protein)

Yoshi_8

Yoshi_9

Yoshi_10

Yoshi_11

Yoshi_12

Yoshi_13

Yoshi_14
(major tail protein)

Yoshi_15
(tail assembly chaperone)

Yoshi_16
(tail assembly chaperone)

Yoshi_17
(tape measure protein)

Yoshi_18

Yoshi_19

Yoshi_20

Yoshi_21

Yoshi_22

Yoshi_23

Yoshi_24

Yoshi_25

Yoshi_26

Yoshi_27

Yoshi_28
(helix-turn-helix DNA binding protein)

Yoshi_29

Yoshi_30

Yoshi_31

Yoshi_32

Yoshi_33

Yoshi_34

Yoshi_35

Yoshi_36

Yoshi_37
(lysin A)

Yoshi_38
(lysin B)

Yoshi_39

Yoshi_40

Yoshi_41

Yoshi_42

Yoshi_43

Yoshi_44

Yoshi_45

Yoshi_46

Yoshi_47

Yoshi_48

Yoshi_49

Yoshi_50

Yoshi_51

Yoshi_52

Yoshi_53

Yoshi_54
(tyrosine integrase)

Yoshi_55

Yoshi_56

Yoshi_57

Yoshi_58

Yoshi_59

Yoshi_60
(antirepressor)

Yoshi_61

Yoshi_62

Yoshi_63

Yoshi_64

Yoshi_65

Yoshi_66

Yoshi_67

Yoshi_68

Yoshi_69
(WhiB family transcription factor)

Yoshi_70
(helix-turn-helix DNA binding protein)

Yoshi_71

Yoshi_72
(WhiB family transcription factor)

Yoshi_73
(helix-turn-helix DNA binding protein)

Yoshi_74

Yoshi_75

Yoshi_76

Yoshi_77

Yoshi_78

Yoshi_79
(AAA-ATPase)

Yoshi_80

Yoshi_81
(HNH endonuclease)

Yoshi_82

Yoshi_83

Yoshi_84

Yoshi_85
(DNA methylase)

Yoshi_86

Yoshi_87
(HNH endonuclease)

Yoshi_88

Yoshi_89

Yoshi_90

Yoshi_91

Yoshi_92

Yoshi_93

Yoshi_94

Yoshi_95

Yoshi_96

Yoshi_97

Yoshi_98

Yoshi_99

Yoshi_100

Yoshi_101

Yoshi_102

Yoshi_103

Yoshi_104

Yoshi_105

Yoshi_106

Yoshi_107

Yoshi_108

Yoshi_109

Yoshi_110

Yoshi_111

Yoshi_112

Yoshi_113

Yoshi_114
(glycosyltransferase)

Yoshi_115
(glycosyltransferase)

Yoshi_116
(glycosyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJF704115
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2009ULOMyoshiDD
SEA Lysate Titer 2.5*10^9
Pitt Freezer Box# 3
Pitt Freezer Box Grid# D5
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload