| Detailed Information for Phage Avian | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Former names | Rubriterminatr |
| Found By | Ian Rasmussen |
| Year Found | 2023 |
| Location Found | Durham, NC United States |
| Finding Institution | Durham Technical Community College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 35.948253 N, 79.050567 W Map |
| Discovery Notes | This phage was found in a raised bed of soil, where we house Coturnix Quail. |
| Naming Notes | Formally called Rubriterminatr and the archive sample is named this way. However, this name is not acceptable as it includes the host name. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 20, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 28 |
| Genome length (bp) | 65287 |
| Character of genome ends | Circularly Permuted |
| GC Content | 57.6% |
| Sequencing Notes | This phage was sequenced as part of a DOGEMS sample. |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DV |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to ViewAlephilan Alyssamiracle Apeppi Avian BirthdayBoy DaviePasture DoobyDoo DumpTruck Erutan Fulcrum Genamy16 Gibbin GOATification GretelLyn Jalebi Jamemuya19 Lambo Lila22 LuckyLeo Mima20 MoiGyank NorManre NovaSharks OtterstedtS21 ParvusTarda Patos Ranch Rumi Sadboi Sampudon Tillicus Wojtek Xenia2 Yikes Zany |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | Planless |
| Plaque Notes | clear plaques with defined borders. |
| Number of Genes | 94 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewAvian_1 Avian_2 Avian_3 Avian_4 Avian_5 Avian_6 Avian_7 Avian_8 Avian_9 Avian_10 Avian_11 Avian_12 Avian_13 Avian_14 Avian_15 Avian_16 Avian_17 Avian_18 Avian_19 Avian_20 Avian_21 Avian_22 Avian_23 Avian_24 Avian_25 Avian_26 Avian_27 Avian_28 Avian_29 Avian_30 Avian_31 Avian_32 Avian_33 Avian_34 Avian_35 Avian_36 Avian_37 Avian_38 Avian_39 Avian_40 Avian_41 Avian_42 Avian_43 Avian_44 Avian_45 Avian_46 Avian_47 Avian_48 Avian_49 Avian_50 Avian_51 Avian_52 Avian_53 Avian_54 Avian_55 Avian_56 Avian_57 Avian_58 Avian_59 Avian_60 Avian_61 Avian_62 Avian_63 Avian_64 Avian_65 Avian_66 Avian_67 Avian_68 Avian_69 Avian_70 Avian_71 Avian_72 Avian_73 Avian_74 Avian_75 Avian_76 Avian_77 Avian_78 Avian_79 Avian_80 Avian_81 Avian_82 Avian_83 Avian_84 Avian_85 Avian_86 Avian_87 Avian_88 Avian_89 Avian_90 Avian_91 Avian_92 Avian_93 Avian_94 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 175 |
| Pitt Freezer Box Grid# | H9 |
| Available Files | |
| EM Picture | Download |