| Detailed Information for Phage Avian |
| Discovery Information |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Former names | Rubriterminatr |
| Found By | Ian Rasmussen |
| Year Found | 2023 |
| Location Found | Durham, NC United States |
| Finding Institution | Durham Technical Community College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 35.948253 N, 79.050567 W Map |
| Discovery Notes | This phage was found in a raised bed of soil, where we house Coturnix Quail. |
| Naming Notes | Formally called Rubriterminatr and the archive sample is named this way.
However, this name is not acceptable as it includes the host name. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 20, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 28 |
| Genome length (bp) | 65287 |
| Character of genome ends | Circularly Permuted |
| GC Content | 57.6% |
| Sequencing Notes | This phage was sequenced as part of a DOGEMS sample. |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DV |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | Collin College |
| Annotation Status | In GenBank |
| Plaque Notes | clear plaques with defined borders. |
| Number of Genes | 91 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PV941003 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
175 |
| Pitt Freezer Box Grid# |
H9 |
| Available Files |
| EM Picture | Download |
| GenBank File for Phamerator | Download |