Discovery Information |
Isolation Host | Streptomyces lividans JI 1326 |
Found By | Kate Wardenburg and Sid Rana |
Year Found | 2016 |
Location Found | Frankfort, IL USA |
Finding Institution | Washington University in St. Louis |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 27°C |
GPS Coordinates | 41.475 N, 87.814 W Map |
Discovery Notes | Found on the edge of a manmade, freshwater lake in the suburbs of Chicago. Home to many species of fish, birds, insects, amphibians, and semi-aquatic mammals, as well as multiple types of grasses, plants, and algae. Sample was a wet, thick mud with organic material. |
Naming Notes | Named for the beloved "Friends" character, Chandler Bing |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 31, 2017 |
Sequencing Facility | The McDonnell Genome Institute at Washington University |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 161 |
Genome length (bp) | 56341 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCCCGCCT |
GC Content | 59.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | BI |
Subcluster | BI5 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Small (0.5nm - 2.0nm diameter), mostly circular with some irregularities, clear center, hazy edges |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
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Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MG757154 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
SEA Lysate Titer |
9.2x10^8 |
Date of SEA Lysate Titering |
Oct 20, 2016 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |