Gordonia phage Birdsong
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Detailed Information for Phage Birdsong
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAnagha Bandaru and Eva Mischler
Year Found2021
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.440357 N, 79.955787 W Map
Discovery NotesFound in flower bed from Bouquet Square Gardens.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage2045
Genome length (bp)53062
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGTTAGGCAT
GC Content63.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
Subcluster--
Cluster Life CycleTemperate
Lysogeny NotesOur phage is a temperate phage because it has a hazy morphology.
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaque size for these clearings were around 2-4mm and circular. The plaques were evenly distributed on the plate.
Number of Genes96
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Birdsong_1
(terminase small subunit)

Birdsong_2
(terminase large subunit)

Birdsong_3
(portal protein)

Birdsong_4

Birdsong_5
(scaffolding protein)

Birdsong_6
(LamD-like capsid decoration protein)

Birdsong_7
(major capsid protein)

Birdsong_8

Birdsong_9
(head-to-tail adaptor)

Birdsong_10
(head-to-tail stopper)

Birdsong_11

Birdsong_12
(tail terminator)

Birdsong_13
(major tail protein)

Birdsong_14
(tail assembly chaperone)

Birdsong_15
(tail assembly chaperone)

Birdsong_16
(tail assembly chaperone)

Birdsong_17
(tape measure protein)

Birdsong_18
(minor tail protein)

Birdsong_19
(minor tail protein)

Birdsong_20

Birdsong_21
(lysin A, L-Ala-D-Glu peptidase domain)

Birdsong_22
(lysin A, glycosyl hydrolase domain)

Birdsong_23
(holin)

Birdsong_24

Birdsong_25

Birdsong_26

Birdsong_27
(lysin B)

Birdsong_28
(minor tail protein)

Birdsong_29

Birdsong_30

Birdsong_31

Birdsong_32

Birdsong_33

Birdsong_34
(minor tail protein)

Birdsong_35
(acetyltransferase)

Birdsong_36

Birdsong_37

Birdsong_38

Birdsong_39

Birdsong_40

Birdsong_41
(helix-turn-helix DNA binding domain protein)

Birdsong_42

Birdsong_43

Birdsong_44

Birdsong_45

Birdsong_46

Birdsong_47
(tyrosine integrase)

Birdsong_48
(helix-turn-helix DNA binding domain protein)

Birdsong_49
(IrrE-like protein)

Birdsong_50

Birdsong_51
(HicA-like toxin)

Birdsong_52
(immunity repressor)

Birdsong_53
(Cro protein)

Birdsong_54
(G-I-Y Y-I-G endonuclease)

Birdsong_55

Birdsong_56
(antirepressor)

Birdsong_57

Birdsong_58

Birdsong_59
(excise)

Birdsong_60

Birdsong_61

Birdsong_62

Birdsong_63

Birdsong_64
(WhiB family transcription factor)

Birdsong_65

Birdsong_66

Birdsong_67
(Cas4 family exonuclease)

Birdsong_68

Birdsong_69

Birdsong_70

Birdsong_71

Birdsong_72

Birdsong_73

Birdsong_74

Birdsong_75

Birdsong_76

Birdsong_77

Birdsong_78

Birdsong_79
(helix-turn-helix DNA binding domain protein)

Birdsong_80
(Holliday junction resolvase)

Birdsong_81

Birdsong_82
(RepA-like replication initiator)

Birdsong_83
(DnaB-like dsDNA helicase)

Birdsong_84
(Holliday junction resolvase)

Birdsong_85

Birdsong_86

Birdsong_87

Birdsong_88

Birdsong_89

Birdsong_90

Birdsong_91

Birdsong_92

Birdsong_93

Birdsong_94

Birdsong_95

Birdsong_96
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP208930
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.0x10^11
Pitt Freezer Box# 141
Pitt Freezer Box Grid# A11
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload