| Detailed Information for Phage Lore | |
| Discovery Information | |
| Isolation Host | Arthrobacter sp. ATCC 21022 |
| Found By | Roshni Jaffery |
| Year Found | 2016 |
| Location Found | Waco, TX USA |
| Finding Institution | Baylor University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 28°C |
| GPS Coordinates | 31.546944 N, 97.113333 W Map |
| Discovery Notes | Soil Meta Data: 09/26/16, 12:39:00 PM Dry top soil, it had just rained the day before. Cloudy. Mean Temp. 70 degrees F when collected Dew Point 67 degrees F Wind Speed 11 mph Outside BSB. Dark Brown 17% sand, 48% silt, 27% clay pH=5.5, 6.4% water |
| Naming Notes | I named my phage Lore like folk lore because I saw phage for the first time and it disappeared from the TEM imaging a few seconds after seeing it on the screen yet we captured an image of it. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 4, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 6696 |
| Genome length (bp) | 15556 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CCCGCGCCACC |
| GC Content | 59.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AN |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewArby Arielagos Azathoth Blair CGermain Chestnut Copper Courtney3 Decurro Dewayne Elkhorn Guntur Hunnie Inspire2 Jessica Kels KylieMac Laila Link Lore LouisXIV Maggie Mariposa Massimo Moloch Muttlie Prospero Ronnie Sandman Saphira SerialPhiller Seume Sourignavong StewieGriff Stratus Swenson Taj14 TinoCrisci Toulouse TymAbreu Yank |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Average plaque size and morphology: 1.5mm, Lytic spots |
| Morphotype | Siphoviridae |
| Number of Genes | 26 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewLore_1 Lore_2 Lore_3 Lore_4 Lore_5 Lore_6 Lore_7 Lore_8 Lore_9 Lore_10 Lore_11 Lore_12 Lore_13 Lore_14 Lore_15 Lore_16 Lore_17 Lore_18 Lore_19 Lore_20 Lore_21 Lore_22 Lore_23 Lore_24 Lore_25 Lore_26 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF140419 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 5.3 x 10^8 PFU/mL |
| Date of SEA Lysate Titering | Nov 14, 2016 |
| Pitt Freezer Box# | 35 |
| Pitt Freezer Box Grid# | F12 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
