Arthrobacter phage Sandman
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| Detailed Information for Phage Sandman | |
| Discovery Information | |
| Isolation Host | Arthrobacter sp. ATCC 21022 |
| Former names | Sandstorm |
| Found By | Marissa Silvi |
| Year Found | 2013 |
| Location Found | Seaside Park , NJ USA |
| Finding Institution | Bucknell University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 39.932261 N, 74.072061 W Map |
| Discovery Notes | Anthrobacter was isolated from sand from M St. Seaside Park beach, NJ. Sand was taken from near the water where sand was moist but not completely soaked. Dug 6 inches down before retrieving sample. |
| Naming Notes | I wanted the phage's name to be sand related for two reasons: because it was isolated from sand, and because hurricane Sandy hit the beach I took the sample from. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 28, 2014 |
| Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
| Shotgun Sequencing Method | 454 Pyrosequencing |
| Approximate Shotgun Coverage | 425 |
| Sanger Finishing Reactions | 4 |
| Genome length (bp) | 15630 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CCCGCGCCACC |
| GC Content | 60.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AN |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotation Status | In GenBank |
| Plaque Notes | Plaque has a slightly cloudy outside and ranges from 0.5 mm to 2.0 mm. |
| Morphotype | Siphoviridae |
| Number of Genes | 26 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSandman_1 Sandman_2 Sandman_3 Sandman_4 Sandman_5 Sandman_6 Sandman_7 Sandman_8 Sandman_9 Sandman_10 Sandman_11 Sandman_12 Sandman_13 Sandman_14 Sandman_15 Sandman_16 Sandman_17 Sandman_18 Sandman_19 Sandman_20 Sandman_27 Sandman_22 Sandman_23 Sandman_24 Sandman_25 Sandman_26 |
| Submitted Annotation in DNA Master Format | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KT355475 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 1 |
| Pitt Freezer Box Grid# | D5 |
| Available Files | |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
