Detailed Information for Phage Sandman | |
Discovery Information | |
Isolation Host | Arthrobacter sp. ATCC 21022 |
Former names | Sandstorm |
Found By | Marissa Silvi |
Year Found | 2013 |
Location Found | Seaside Park , NJ USA |
Finding Institution | Bucknell University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 39.932261 N, 74.072061 W Map |
Discovery Notes | Anthrobacter was isolated from sand from M St. Seaside Park beach, NJ. Sand was taken from near the water where sand was moist but not completely soaked. Dug 6 inches down before retrieving sample. |
Naming Notes | I wanted the phage's name to be sand related for two reasons: because it was isolated from sand, and because hurricane Sandy hit the beach I took the sample from. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 28, 2014 |
Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
Shotgun Sequencing Method | 454 Pyrosequencing |
Approximate Shotgun Coverage | 425 |
Sanger Finishing Reactions | 4 |
Genome length (bp) | 15630 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CCCGCGCCACC |
GC Content | 60.0% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | AN |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
Click to View |
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Plaque has a slightly cloudy outside and ranges from 0.5 mm to 2.0 mm. |
Morphotype | Siphoviridae |
Number of Genes | 26 |
Has been Phamerated? | Yes |
Gene List |
Click to ViewSandman_1 Sandman_2 Sandman_3 Sandman_4 Sandman_5 Sandman_6 Sandman_7 Sandman_8 Sandman_9 Sandman_10 Sandman_11 Sandman_12 Sandman_13 Sandman_14 Sandman_15 Sandman_16 Sandman_17 Sandman_18 Sandman_19 Sandman_20 Sandman_27 Sandman_22 Sandman_23 Sandman_24 Sandman_25 Sandman_26 |
Submitted Annotation in DNA Master Format | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | KT355475 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
Pitt Freezer Box# | 1 |
Pitt Freezer Box Grid# | D5 |
Available Files | |
Virtual Digest Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |