Mycobacterium phage Rabbs
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| Detailed Information for Phage Rabbs | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Jesus M. Suarez |
| Year Found | 2017 |
| Location Found | Kingsville, TX USA |
| Finding Institution | Del Mar College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 27.386944 N, 97.806944 W Map |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 16, 2018 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 2866 |
| Genome length (bp) | 42430 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CCCATGGCAT |
| End Determination Notes | Two clear buildups of read starts heading in opposite directions with a 10-base sequence between them. |
| GC Content | 66.4% |
| Sequencing Notes | Though most G1s, including the closely-related Sneeze, have 11-base 3' overhangs, this genome quite clearly has only a 10-base overhang. There appears to be a T to C nucleotide change right near the physical end of the genome which has moved the cut site over by a base. |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | G |
| Subcluster | G1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Del Mar College |
| Annotation Status | In GenBank |
| Plaque Notes | The plaque morphology is lytic. |
| Morphotype | Siphoviridae |
| Number of Genes | 65 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK524494 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 71 |
| Pitt Freezer Box Grid# | F9 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |