Detailed Information for Phage Lemuria |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Deborah Jacobs-Sera |
Year Found | 2018 |
Location Found | Antsirabe, Madagascar |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Yes |
Isolation Temperature | 22°C |
GPS Coordinates | 19.864435 S, 47.033506 E Map |
Discovery Notes | Enriched and isolated at room temperature. Soil was from a drainage ditch. |
Naming Notes | Named for the hypothetical land mass in the Indian Ocean. Originally, Lemuria was hypothesized as a land bridge, now sunken, which would account for certain discontinuities in biogeography. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jul 23, 2018 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 708 |
Genome length (bp) | 44998 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CCCCGTGGCAT |
GC Content | 68.8% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | G |
Subcluster | G4 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MN234185 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
7 |
Pitt Freezer Box Grid# |
C10 |
Available Files |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |