| Detailed Information for Phage Rima | |
| Discovery Information | |
| Isolation Host | Streptomyces azureus NRRL B-2655 |
| Found By | Swapan Bhuiyan |
| Year Found | 2014 |
| Location Found | Brooklyn, NY USA |
| Finding Institution | University of North Texas |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.674761 N, 73.952306 W Map |
| Discovery Notes | Soil was collected from my backyard where my parents garden extensively. The soil was collected at night. The temperature was rather mild for a summer day. It was slightly wet from watering the garden. It had sandy texture. |
| Naming Notes | The phage is named after my sister. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 10, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 3754 |
| Genome length (bp) | 56168 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCCCGCCT |
| GC Content | 59.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | BI |
| Subcluster | BI1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewCherryBlossom (BI1) DrGrey (BI1) Esketit (BI1) FidgetOrca (BI1) FrodoSwaggins (BI1) GirlPower (BI1) HazuAndZazu (BI1) Hoshi (BI1) IceWarrior (BI1) Indigenous (BI1) Jaylociraptor (BI1) Madamato (BI1) Maya (BI1) Meibysrarus (BI1) Namo (BI1) OlympicHelado (BI1) Popy (BI1) Rima (BI1) Soshi (BI1) Spectropatronm (BI1) TaidaOne (BI1) TieDye (BI1) TonyStarch (BI1) Annihilus (BI2) Bilo (BI2) Doxi13 (BI2) GoblinVoyage (BI2) HotFries (BI2) Moozy (BI2) PherryCruz (BI2) RavenPuff (BI2) RosaAsantewaa (BI2) Scap1 (BI2) SheRa (BI2) LibertyBell (BI3) CricKo (BI4) FromIndy (BI4) Miek (BI4) Rainydai (BI4) Regigigas (BI4) SendItCS (BI4) Thiqqums (BI4) Bing (BI5) Kardashian (BI6) ClubPenguin (BI7) |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plaque were clear perfect circles. |
| Number of Genes | 87 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewRima_1 Rima_2 Rima_3 Rima_4 Rima_5 Rima_6 Rima_7 Rima_8 Rima_9 Rima_10 Rima_11 Rima_12 Rima_13 Rima_14 Rima_15 Rima_16 Rima_17 Rima_18 Rima_19 Rima_20 Rima_21 Rima_22 Rima_23 Rima_24 Rima_25 Rima_26 Rima_27 Rima_28 Rima_29 Rima_30 Rima_31 Rima_32 Rima_33 Rima_34 Rima_35 Rima_36 Rima_37 Rima_38 Rima_39 Rima_40 Rima_41 Rima_42 Rima_43 Rima_44 Rima_45 Rima_46 Rima_47 Rima_48 Rima_49 Rima_50 Rima_51 Rima_52 Rima_53 Rima_54 Rima_55 Rima_56 Rima_57 Rima_58 Rima_59 Rima_60 Rima_61 Rima_62 Rima_63 Rima_64 Rima_65 Rima_66 Rima_67 Rima_68 Rima_69 Rima_70 Rima_71 Rima_72 Rima_73 Rima_74 Rima_75 Rima_76 Rima_77 Rima_78 Rima_79 Rima_80 Rima_81 Rima_82 Rima_83 Rima_84 Rima_85 Rima_86 Rima_87 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KX670790 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.4E9 |
| Pitt Freezer Box# | 36 |
| Pitt Freezer Box Grid# | C3 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
