Microbacterium phage RunningBrook
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Detailed Information for Phage RunningBrook
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByHaley Roach
Year Found2022
Location FoundAmes, IA United States
Finding InstitutionIowa State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates42.02936 N, 93.64667 W Map
Discovery NotesThis phage was isolated from one of the sample plates (plate B) prepared by class professor Dr. Nicholas Peters.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 8, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1562
Genome length (bp)63925
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length3835 bp
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterED
SubclusterED2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionIowa State University
Annotation StatusIn GenBank
Number of Genes120
Number of tRNAs5
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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RunningBrook_1

RunningBrook_2

RunningBrook_3

RunningBrook_4

RunningBrook_5

RunningBrook_6

RunningBrook_7

RunningBrook_8

RunningBrook_9

RunningBrook_10

RunningBrook_11

RunningBrook_12

RunningBrook_13

RunningBrook_14

RunningBrook_15

RunningBrook_16

RunningBrook_17

RunningBrook_18

RunningBrook_19

RunningBrook_20

RunningBrook_21

RunningBrook_22

RunningBrook_23

RunningBrook_24

RunningBrook_25

RunningBrook_26 — tRNA
(tRNA-Asn(gtt))

RunningBrook_27 — tRNA
(tRNA-Gly(tcc))

RunningBrook_28 — tRNA
(tRNA-Thr(agt))

RunningBrook_29 — tRNA
(tRNA-Tyr(gta))

RunningBrook_30

RunningBrook_31

RunningBrook_32

RunningBrook_33

RunningBrook_34

RunningBrook_35

RunningBrook_36
(NrdH-like glutaredoxin)

RunningBrook_37
(metallophosphatase)

RunningBrook_38
(HNH endonuclease)

RunningBrook_39

RunningBrook_40
(terminase)

RunningBrook_41
(portal protein)

RunningBrook_42
(capsid maturation protease)

RunningBrook_43

RunningBrook_44
(major capsid protein)

RunningBrook_45

RunningBrook_46

RunningBrook_47

RunningBrook_48
(hydrolase)

RunningBrook_49
(head-to-tail stopper)

RunningBrook_50

RunningBrook_51
(tail terminator)

RunningBrook_52

RunningBrook_53
(major tail protein)

RunningBrook_54
(major tail protein)

RunningBrook_55
(tail assembly chaperone)

RunningBrook_56
(tail assembly chaperone)

RunningBrook_57
(tape measure protein)

RunningBrook_58
(minor tail protein)

RunningBrook_59
(minor tail protein)

RunningBrook_60

RunningBrook_61

RunningBrook_62

RunningBrook_63
(endolysin)

RunningBrook_64

RunningBrook_65

RunningBrook_66
(RuvC-like resolvase)

RunningBrook_67

RunningBrook_68

RunningBrook_69

RunningBrook_70

RunningBrook_71
(DNA primase/polymerase/helicase)

RunningBrook_72 — tRNA
(tRNA-Undet(nnn))

RunningBrook_73

RunningBrook_74

RunningBrook_75

RunningBrook_76
(exonuclease)

RunningBrook_77
(ERF family DNA pairing protein)

RunningBrook_78

RunningBrook_79
(DnaQ-like (DNA polymerase III subunit))

RunningBrook_80

RunningBrook_81

RunningBrook_82
(RNA ligase)

RunningBrook_83
(polynucleotide kinase)

RunningBrook_84

RunningBrook_85

RunningBrook_86
(DNA helicase)

RunningBrook_87

RunningBrook_88

RunningBrook_89

RunningBrook_90

RunningBrook_91

RunningBrook_92

RunningBrook_93

RunningBrook_94

RunningBrook_95

RunningBrook_96

RunningBrook_97

RunningBrook_98

RunningBrook_99

RunningBrook_100

RunningBrook_101

RunningBrook_102

RunningBrook_103
(helix-turn-helix DNA binding domain)

RunningBrook_104

RunningBrook_105

RunningBrook_106

RunningBrook_107

RunningBrook_108

RunningBrook_109

RunningBrook_110

RunningBrook_111

RunningBrook_112

RunningBrook_113

RunningBrook_114

RunningBrook_115

RunningBrook_116

RunningBrook_117

RunningBrook_118

RunningBrook_119

RunningBrook_120

RunningBrook_121

RunningBrook_122

RunningBrook_123

RunningBrook_124

RunningBrook_125

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPQ559671
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 152
Pitt Freezer Box Grid# E1
Available Files
GenBank File for PhameratorDownload