| Detailed Information for Phage Sandman | |
| Discovery Information | |
| Isolation Host | Arthrobacter sp. ATCC 21022 |
| Former names | Sandstorm |
| Found By | Marissa Silvi |
| Year Found | 2013 |
| Location Found | Seaside Park , NJ USA |
| Finding Institution | Bucknell University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 39.932261 N, 74.072061 W Map |
| Discovery Notes | Anthrobacter was isolated from sand from M St. Seaside Park beach, NJ. Sand was taken from near the water where sand was moist but not completely soaked. Dug 6 inches down before retrieving sample. |
| Naming Notes | I wanted the phage's name to be sand related for two reasons: because it was isolated from sand, and because hurricane Sandy hit the beach I took the sample from. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 28, 2014 |
| Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
| Shotgun Sequencing Method | 454 |
| Approximate Shotgun Coverage | 425 |
| Sanger Finishing Reactions | 4 |
| Genome length (bp) | 15630 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CCCGCGCCACC |
| GC Content | 60.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AN |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewArby Arielagos Azathoth Blair CGermain Chestnut Copper Courtney3 Decurro Dewayne Elkhorn Guntur Hunnie Inspire2 Jessica Kels KylieMac Laila Link Lore LouisXIV Maggie Mariposa Massimo Moloch Muttlie Prospero Ronnie Sandman Saphira SerialPhiller Seume Sourignavong StewieGriff Stratus Swenson Taj14 TinoCrisci Toulouse TymAbreu Yank |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Plaque has a slightly cloudy outside and ranges from 0.5 mm to 2.0 mm. |
| Morphotype | Siphoviridae |
| Number of Genes | 26 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSandman_1 Sandman_2 Sandman_3 Sandman_4 Sandman_5 Sandman_6 Sandman_7 Sandman_8 Sandman_9 Sandman_10 Sandman_11 Sandman_12 Sandman_13 Sandman_14 Sandman_15 Sandman_16 Sandman_17 Sandman_18 Sandman_19 Sandman_20 Sandman_27 Sandman_22 Sandman_23 Sandman_24 Sandman_25 Sandman_26 |
| Submitted Annotation in DNA Master Format | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KT355475 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 148 |
| Pitt Freezer Box Grid# | A10 |
| Available Files | |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
