| Detailed Information for Phage DoobyDoo | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Autumn Grantz |
| Year Found | 2023 |
| Location Found | New Albany, IN United States of America |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 26°C |
| GPS Coordinates | 38.35806 N, 85.8027 W Map |
| Discovery Notes | The soil sample was collected from a flower garden. The soil was dark brown and moist and dug about 2 in. from the ground. Soil was collected on 9/11/2023. |
| Naming Notes | Ibrahim Abdulrehman and Preston Penny isolated DoobyDoo. We were inspired by the American animated cartoon series Scooby-Doo, with its central theme of investigation, and named our phage after the main protagonist Scoobert “Scooby” Doo. Much like on the show, the Mystery Incorporated gang is always asking, "Scooby Doo, where are you?" There was a struggle to isolate a phage sample successfully. It had us asking, "Phage sample, where are you?" Thus, the name DoobyDoo was created! |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 2, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 773 |
| Genome length (bp) | 66343 |
| Character of genome ends | Circularly Permuted |
| GC Content | 58.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DV |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to ViewAlephilan Alyssamiracle Apeppi Avian BirthdayBoy DaviePasture DoobyDoo DumpTruck Erutan Fulcrum Genamy16 Gibbin GOATification GretelLyn Jalebi Jamemuya19 Lambo Lila22 LuckyLeo Mima20 MoiGyank NorManre NovaSharks OtterstedtS21 ParvusTarda Patos Ranch Rumi Sadboi Sampudon Tillicus Wojtek Xenia2 Yikes Zany |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | In GenBank |
| Plaque Notes | Our phage creates approximately 1 millimeter-in diameter plaques. The plaques appear distinctly cleared on agar plates and have defined edges. They have an irregular circular shape. |
| Number of Genes | 97 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDoobyDoo_1 DoobyDoo_2 DoobyDoo_3 DoobyDoo_4 DoobyDoo_5 DoobyDoo_6 DoobyDoo_7 DoobyDoo_8 DoobyDoo_9 DoobyDoo_10 DoobyDoo_11 DoobyDoo_12 DoobyDoo_13 DoobyDoo_14 DoobyDoo_15 DoobyDoo_16 DoobyDoo_17 DoobyDoo_18 DoobyDoo_19 DoobyDoo_20 DoobyDoo_21 DoobyDoo_22 DoobyDoo_23 DoobyDoo_24 DoobyDoo_25 DoobyDoo_26 DoobyDoo_27 DoobyDoo_28 DoobyDoo_29 DoobyDoo_30 DoobyDoo_31 DoobyDoo_32 DoobyDoo_33 DoobyDoo_34 DoobyDoo_35 DoobyDoo_36 DoobyDoo_37 DoobyDoo_38 DoobyDoo_39 DoobyDoo_40 DoobyDoo_41 DoobyDoo_42 DoobyDoo_43 DoobyDoo_44 DoobyDoo_45 DoobyDoo_46 DoobyDoo_47 DoobyDoo_48 DoobyDoo_49 DoobyDoo_50 DoobyDoo_51 DoobyDoo_52 DoobyDoo_53 DoobyDoo_54 DoobyDoo_55 DoobyDoo_56 DoobyDoo_57 DoobyDoo_58 DoobyDoo_59 DoobyDoo_60 DoobyDoo_61 DoobyDoo_62 DoobyDoo_63 DoobyDoo_64 DoobyDoo_65 DoobyDoo_66 DoobyDoo_67 DoobyDoo_68 DoobyDoo_69 DoobyDoo_70 DoobyDoo_71 DoobyDoo_72 DoobyDoo_73 DoobyDoo_74 DoobyDoo_75 DoobyDoo_76 DoobyDoo_77 DoobyDoo_78 DoobyDoo_79 DoobyDoo_80 DoobyDoo_81 DoobyDoo_82 DoobyDoo_83 DoobyDoo_84 DoobyDoo_85 DoobyDoo_86 DoobyDoo_87 DoobyDoo_88 DoobyDoo_89 DoobyDoo_90 DoobyDoo_91 DoobyDoo_92 DoobyDoo_93 DoobyDoo_94 DoobyDoo_95 DoobyDoo_96 DoobyDoo_97 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PQ362665 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 184 |
| Pitt Freezer Box Grid# | A2 |
| Available Files | |
| GenBank File for Phamerator | Download |