Gordonia phage Gibbin
Gibbin EM Picture
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Detailed Information for Phage Gibbin
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByMichael Lauer
Year Found2018
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.447276 N, 79.953995 W Map
Discovery NotesDiscovered in a field outside of Crawford hall at the University of Pittsburgh under some bushes (near roots).
Naming Notesthought the name was fitting for a phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 19, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage445
Genome length (bp)67785
Character of genome endsCircularly Permuted
GC Content58.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDV
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque Notesclear, small, abundant and close together.
Number of Genes99
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Gibbin_1

Gibbin_2
(terminase)

Gibbin_3
(portal protein)

Gibbin_4
(esterase)

Gibbin_5

Gibbin_6

Gibbin_7

Gibbin_8

Gibbin_9

Gibbin_10

Gibbin_11

Gibbin_12
(metalloprotease)

Gibbin_13
(MuF-like minor capsid protein)

Gibbin_14

Gibbin_15
(minor capsid protein)

Gibbin_16
(major capsid protein)

Gibbin_17

Gibbin_18

Gibbin_19

Gibbin_20
(head-to-tail stopper)

Gibbin_21

Gibbin_22
(tail terminator)

Gibbin_23

Gibbin_24

Gibbin_25
(major tail protein)

Gibbin_26

Gibbin_27

Gibbin_28
(tape measure protein)

Gibbin_29
(minor tail protein)

Gibbin_30
(minor tail protein)

Gibbin_31
(minor tail protein)

Gibbin_32

Gibbin_33

Gibbin_34

Gibbin_35

Gibbin_36

Gibbin_37
(lysin A)

Gibbin_38

Gibbin_39

Gibbin_40

Gibbin_41

Gibbin_42

Gibbin_43

Gibbin_44

Gibbin_45

Gibbin_46

Gibbin_47

Gibbin_48

Gibbin_49

Gibbin_50

Gibbin_51

Gibbin_52

Gibbin_53

Gibbin_54

Gibbin_55

Gibbin_56

Gibbin_57

Gibbin_58

Gibbin_59

Gibbin_60

Gibbin_61

Gibbin_62
(DNA helicase)

Gibbin_63

Gibbin_64

Gibbin_65

Gibbin_66

Gibbin_67
(Cas4 family exonuclease)

Gibbin_68

Gibbin_69
(RecA-like DNA recombinase)

Gibbin_70

Gibbin_71
(oxidoreductase)

Gibbin_72
(nucleotide pyrophosphohydrolase)

Gibbin_73

Gibbin_74

Gibbin_75
(methyltransferase)

Gibbin_76

Gibbin_77
(oxidoreductase)

Gibbin_78

Gibbin_79

Gibbin_80

Gibbin_81
(DnaE-like DNA polymerase III)

Gibbin_82
(MazG-like nucleotide pyrophosphohydrolase)

Gibbin_83

Gibbin_84

Gibbin_85
(ThyX-like thymidylate synthase)

Gibbin_86

Gibbin_87
(RuvC-like resolvase)

Gibbin_88
(lysin B)

Gibbin_89

Gibbin_90
(DNA primase/polymerase)

Gibbin_91

Gibbin_92

Gibbin_93

Gibbin_94

Gibbin_95

Gibbin_96

Gibbin_97

Gibbin_98

Gibbin_99

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234190
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 96
Pitt Freezer Box Grid# D6
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload