Gordonia phage ParvusTarda
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Detailed Information for Phage ParvusTarda
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByGaston Sanchez
Year Found2021
Location FoundAnnandale, VA United States
Finding InstitutionGeorge Mason University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature-1°C
GPS Coordinates38.81615 N, 77.214749 W Map
Discovery NotesThe soil type collected was wet and full of organic matter.
the soil collected was also 4 inches below the surface at an elevation of 100 meters.
Naming NotesThe Phage was named Parvus Tarda because of how small the plaques were when plated (Parvus). Also, because of how slow the plaques were to form (Tarda).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 11, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage114
Genome length (bp)67279
Character of genome endsCircularly Permuted
GC Content58.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDV
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionGeorge Mason University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes98
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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ParvusTarda_1

ParvusTarda_2
(terminase)

ParvusTarda_3
(portal protein)

ParvusTarda_4

ParvusTarda_5

ParvusTarda_6

ParvusTarda_7

ParvusTarda_8

ParvusTarda_9

ParvusTarda_10

ParvusTarda_11

ParvusTarda_12

ParvusTarda_13

ParvusTarda_14

ParvusTarda_15
(major capsid protein)

ParvusTarda_16

ParvusTarda_17

ParvusTarda_18

ParvusTarda_19
(head-to-tail stopper)

ParvusTarda_20
(minor capsid protein)

ParvusTarda_21
(tail terminator)

ParvusTarda_22

ParvusTarda_23

ParvusTarda_24
(major tail protein)

ParvusTarda_25

ParvusTarda_26

ParvusTarda_27
(tape measure protein)

ParvusTarda_28
(minor tail protein)

ParvusTarda_29
(minor tail protein)

ParvusTarda_30
(minor tail protein)

ParvusTarda_31

ParvusTarda_32

ParvusTarda_33

ParvusTarda_34

ParvusTarda_35

ParvusTarda_36
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

ParvusTarda_37

ParvusTarda_38

ParvusTarda_39

ParvusTarda_40

ParvusTarda_41

ParvusTarda_42

ParvusTarda_43

ParvusTarda_44

ParvusTarda_45

ParvusTarda_46

ParvusTarda_47

ParvusTarda_48

ParvusTarda_49

ParvusTarda_50

ParvusTarda_51

ParvusTarda_52

ParvusTarda_53

ParvusTarda_54

ParvusTarda_55

ParvusTarda_56

ParvusTarda_57

ParvusTarda_58

ParvusTarda_59
(DNA helicase)

ParvusTarda_60

ParvusTarda_61

ParvusTarda_62

ParvusTarda_63

ParvusTarda_64
(Cas4 family exonuclease)

ParvusTarda_65

ParvusTarda_66
(RecA-like DNA recombinase)

ParvusTarda_67

ParvusTarda_68
(oxidoreductase)

ParvusTarda_69
(phosphatase)

ParvusTarda_70

ParvusTarda_71

ParvusTarda_72
(methyltransferase)

ParvusTarda_73

ParvusTarda_74
(oxidoreductase)

ParvusTarda_75

ParvusTarda_76

ParvusTarda_77
(DnaE-like DNA polymerase III alpha)

ParvusTarda_78
(MazG-like nucleotide pyrophosphohydrolase)

ParvusTarda_79

ParvusTarda_80

ParvusTarda_81

ParvusTarda_82
(ThyX-like thymidylate synthase)

ParvusTarda_83

ParvusTarda_84

ParvusTarda_85
(RuvC-like resolvase)

ParvusTarda_86
(lysin B)

ParvusTarda_87

ParvusTarda_88
(DNA primase/polymerase)

ParvusTarda_89

ParvusTarda_90

ParvusTarda_91

ParvusTarda_92

ParvusTarda_93

ParvusTarda_94

ParvusTarda_95

ParvusTarda_96

ParvusTarda_97

ParvusTarda_98

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP172868
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 130
Pitt Freezer Box Grid# E6
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload