| Detailed Information for Phage Phedro | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Adopted by Medha Gupta and Gloria Zacharias |
| Year Found | 2019 |
| Location Found | Philadelphia, PA United States |
| Finding Institution | Drexel University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 26°C |
| GPS Coordinates | 39.959722 N, 75.190278 W Map |
| Discovery Notes | The soil sample was found in a grassy area near trees in between Myers and Millenium Halls at Drexel University. The sample was collected on October 2, 2019 at 10:30 A.M. from a depth of 3 centimeters. |
| Naming Notes | We chose to name our phage Phedro because it is a variation of the name Pedro. Pedro is derived from the Latin word "petra" meaning rock. Since this is our first college biology lab of many more to come, we considered this phage to be our a rock or foundation in our education. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 4, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 266 |
| Genome length (bp) | 54442 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EK |
| Subcluster | EK2 |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to ViewEugeneKrabs (None) KingKamren (None) Zhengyi (None) Alex44 (EK1) ArMaWen (EK1) Biozilla (EK1) Birdfeeder (EK1) BlueRugrat (EK1) Corn21 (EK1) CrunchyBoi (EK1) Dashyla (EK1) DumpQuist (EK1) HitchHiker (EK1) LesNorah (EK1) LilyLou (EK1) Oatly (EK1) Pabst (EK1) Phogo (EK1) PineapplePluto (EK1) Stormbreaker (EK1) TinyTimothy (EK1) Unphazed (EK1) Wesak (EK1) Xitlalli (EK1) YellowPanda (EK1) Akoni (EK2) AloeVera (EK2) Ashton (EK2) Astartes (EK2) Atraxi (EK2) Barroma (EK2) Fede (EK2) Fullmetal (EK2) JordanFarm (EK2) Mazun (EK2) Moleficent (EK2) Morrill (EK2) Pharky (EK2) Phedro (EK2) Phractured (EK2) PhriedRice (EK2) RicoCaldo (EK2) StagePhright (EK2) ThirteenKH (EK2) TrippleS (EK2) Truong (EK2) Waterlily (EK2) Yafa (EK2) |
| Annotating Institution | Drexel University |
| Annotation Status | In GenBank |
| Number of Genes | 55 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewPhedro_1 Phedro_2 Phedro_3 Phedro_4 Phedro_5 Phedro_6 Phedro_7 Phedro_8 Phedro_9 Phedro_10 Phedro_11 Phedro_12 Phedro_13 Phedro_14 Phedro_15 Phedro_16 Phedro_17 Phedro_18 Phedro_19 Phedro_20 Phedro_21 Phedro_22 Phedro_23 Phedro_24 Phedro_25 Phedro_26 Phedro_27 Phedro_28 Phedro_29 Phedro_30 Phedro_31 Phedro_32 Phedro_33 Phedro_34 Phedro_35 Phedro_36 Phedro_37 Phedro_38 Phedro_39 Phedro_40 Phedro_41 Phedro_42 Phedro_43 Phedro_44 Phedro_45 Phedro_46 Phedro_47 Phedro_48 Phedro_49 Phedro_50 Phedro_51 Phedro_52 Phedro_53 Phedro_54 Phedro_55 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT310890 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 105 |
| Pitt Freezer Box Grid# | H5 |
| Available Files | |
| Plaque Picture | Download |
| GenBank File for Phamerator | Download |