Microbacterium phage Yafa
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Detailed Information for Phage Yafa
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByTamara Sandouka
Year Found2019
Location FoundOttawa, Canada
Finding InstitutionUniversity of Ottawa
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature9°C
GPS Coordinates45.396863 N, 75.702315 W Map
Discovery NotesSample was taken from soil fed by lake water around 6 feet away from water stream. Sample was damp, and the location is abundant with wild-life and is rich with rocks and minerals.
Naming NotesYafa is named after the place of origin of my family. A beautiful place just like the place where my sample came from.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 9, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage257
Genome length (bp)53796
Character of genome endsCircularly Permuted
GC Content58.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEK
SubclusterEK2
Cluster Life CycleUnknown
Lysogeny Notes= Phage had the ability to undergo the lysogenic life cycle.
= Phage is temperate
= Lysogen of this phage was tested and has partial superinfection immunity.
= Lysogen strain name is XY2
Other Cluster Members
Annotating InstitutionUniversity of Ottawa
Annotation StatusBeing Annotated (Expected completion by 2/9/2021)
Plaque Notes"Bull's eye" morphology
Medium in size
Semi-clear
MorphotypePodoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.0x10^10
Pitt Freezer Box# 106
Pitt Freezer Box Grid# E7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload