| Detailed Information for Phage Yafa | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Tamara Sandouka |
| Year Found | 2019 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 9°C |
| GPS Coordinates | 45.396863 N, 75.702315 W Map |
| Discovery Notes | Sample was taken from soil fed by lake water around 6 feet away from water stream. Sample was damp, and the location is abundant with wild-life and is rich with rocks and minerals. |
| Naming Notes | Yafa is named after the place of origin of my family. A beautiful place just like the place where my sample came from. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 9, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 257 |
| Genome length (bp) | 53796 |
| Character of genome ends | Circularly Permuted |
| GC Content | 58.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EK |
| Subcluster | EK2 |
| Cluster Life Cycle | Unknown |
| Lysogeny Notes | = Phage had the ability to undergo the lysogenic life cycle. = Phage is temperate = Lysogen of this phage was tested and has partial superinfection immunity. = Lysogen strain name is XY2 |
| Other Cluster Members |
Click to ViewEugeneKrabs (None) Zhengyi (None) Alex44 (EK1) ArMaWen (EK1) Birdfeeder (EK1) BlueRugrat (EK1) Corn21 (EK1) CrunchyBoi (EK1) DumpQuist (EK1) HitchHiker (EK1) LesNorah (EK1) LilyLou (EK1) Pabst (EK1) Phogo (EK1) PineapplePluto (EK1) Stormbreaker (EK1) TinyTimothy (EK1) Unphazed (EK1) Wesak (EK1) Xitlalli (EK1) YellowPanda (EK1) Akoni (EK2) AloeVera (EK2) Ashton (EK2) Atraxi (EK2) Fede (EK2) Fullmetal (EK2) JordanFarm (EK2) Mazun (EK2) Moleficent (EK2) Morrill (EK2) Pharky (EK2) Phedro (EK2) Phractured (EK2) PhriedRice (EK2) StagePhright (EK2) ThirteenKH (EK2) Truong (EK2) Yafa (EK2) |
| Annotating Institution | University of Ottawa |
| Annotation Status | Overdue (Expected completion by 7/15/2023) |
| Plaque Notes | "Bull's eye" morphology Medium in size Semi-clear |
| Morphotype | Podoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewYafa_Draft_1 Yafa_Draft_2 Yafa_Draft_3 Yafa_Draft_4 Yafa_Draft_5 Yafa_Draft_6 Yafa_Draft_7 Yafa_Draft_8 Yafa_Draft_9 Yafa_Draft_10 Yafa_Draft_11 Yafa_Draft_12 Yafa_Draft_13 Yafa_Draft_14 Yafa_Draft_15 Yafa_Draft_16 Yafa_Draft_17 Yafa_Draft_18 Yafa_Draft_19 Yafa_Draft_20 Yafa_Draft_21 Yafa_Draft_22 Yafa_Draft_23 Yafa_Draft_24 Yafa_Draft_25 Yafa_Draft_26 Yafa_Draft_27 Yafa_Draft_28 Yafa_Draft_29 Yafa_Draft_30 Yafa_Draft_32 Yafa_Draft_33 Yafa_Draft_34 Yafa_Draft_35 Yafa_Draft_36 Yafa_Draft_37 Yafa_Draft_38 Yafa_Draft_39 Yafa_Draft_40 Yafa_Draft_41 Yafa_Draft_42 Yafa_Draft_43 Yafa_Draft_44 Yafa_Draft_45 Yafa_Draft_46 Yafa_Draft_47 Yafa_Draft_48 Yafa_Draft_49 Yafa_Draft_50 Yafa_Draft_51 Yafa_Draft_52 Yafa_Draft_53 Yafa_Draft_54 Yafa_Draft_55 Yafa_Draft_56 Yafa_Draft_57 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.0x10^10 |
| Pitt Freezer Box# | 106 |
| Pitt Freezer Box Grid# | E7 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
