| Detailed Information for Phage Yafa | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Tamara Sandouka |
| Year Found | 2019 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 9°C |
| GPS Coordinates | 45.396863 N, 75.702315 W Map |
| Discovery Notes | Sample was taken from soil fed by lake water around 6 feet away from water stream. Sample was damp, and the location is abundant with wild-life and is rich with rocks and minerals. |
| Naming Notes | Yafa is named after the place of origin of my family. A beautiful place just like the place where my sample came from. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 9, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 257 |
| Genome length (bp) | 53796 |
| Character of genome ends | Circularly Permuted |
| GC Content | 58.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EK |
| Subcluster | EK2 |
| Cluster Life Cycle | Unknown |
| Lysogeny Notes | = Phage had the ability to undergo the lysogenic life cycle. = Phage is temperate = Lysogen of this phage was tested and has partial superinfection immunity. = Lysogen strain name is XY2 |
| Other Cluster Members |
Click to ViewEugeneKrabs (None) KingKamren (None) Zhengyi (None) Alex44 (EK1) ArMaWen (EK1) Biozilla (EK1) Birdfeeder (EK1) BlueRugrat (EK1) Corn21 (EK1) CrunchyBoi (EK1) Dashyla (EK1) DumpQuist (EK1) HitchHiker (EK1) JessellCookie (EK1) LesNorah (EK1) LilyLou (EK1) MiamiPanther (EK1) Oatly (EK1) Pabst (EK1) Phogo (EK1) PineapplePluto (EK1) Stormbreaker (EK1) SwissCheezer (EK1) TicTac (EK1) TinyTimothy (EK1) TownLake (EK1) Unphazed (EK1) Wesak (EK1) Xitlalli (EK1) YellowPanda (EK1) Akoni (EK2) AloeVera (EK2) Ashton (EK2) Astartes (EK2) Atraxi (EK2) Barroma (EK2) Fede (EK2) Fullmetal (EK2) JimmyPG (EK2) JordanFarm (EK2) Keough (EK2) Kosier (EK2) Mazun (EK2) Moleficent (EK2) Morrill (EK2) Pharky (EK2) Phedro (EK2) Phractured (EK2) PhriedRice (EK2) RicoCaldo (EK2) ShyRosie (EK2) StagePhright (EK2) ThirteenKH (EK2) TrippleS (EK2) Truong (EK2) Waterlily (EK2) Yafa (EK2) |
| Annotating Institution | University of Ottawa |
| Annotation Status | Overdue (Expected completion by 8/31/2024) |
| Plaque Notes | "Bull's eye" morphology Medium in size Semi-clear |
| Morphotype | Podoviridae |
| Number of Genes | 56 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewYafa_1 Yafa_2 Yafa_3 Yafa_4 Yafa_5 Yafa_6 Yafa_7 Yafa_8 Yafa_9 Yafa_10 Yafa_11 Yafa_12 Yafa_13 Yafa_14 Yafa_15 Yafa_16 Yafa_17 Yafa_18 Yafa_19 Yafa_20 Yafa_21 Yafa_22 Yafa_23 Yafa_24 Yafa_25 Yafa_26 Yafa_27 Yafa_28 Yafa_29 Yafa_30 Yafa_31 — tRNA Yafa_32 Yafa_33 Yafa_34 Yafa_35 Yafa_36 Yafa_37 Yafa_38 Yafa_39 Yafa_40 Yafa_41 Yafa_42 Yafa_43 Yafa_44 Yafa_45 Yafa_46 Yafa_47 Yafa_48 Yafa_49 Yafa_50 Yafa_51 Yafa_52 Yafa_53 Yafa_54 Yafa_55 Yafa_56 Yafa_57 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.0x10^10 |
| Pitt Freezer Box# | 106 |
| Pitt Freezer Box Grid# | E7 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
