Mycobacterium phage Reindeer
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Detailed Information for Phage Reindeer
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAnna Fortier & Madi Kritsch
Year Found2016
Location FoundLongview, TX USA
Finding InstitutionLeTourneau University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature33°C
GPS Coordinates32.508239 N, 94.760182 W Map
Discovery NotesThe area where we collected soil was off of a public trail found in Longview, Texas. It was a shady area full of green foliage and soil that was slightly moist. We dug approximately 4 inches into the ground to collect the sample.
Naming NotesWe named the phage Reindeer because we both love Christmas! We also wanted to spread the holiday cheer by finding phage for all to hear!
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 3, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Genome length (bp)82356
Character of genome endsUnknown
Overhang Length11 bases
Overhang SequenceACCTCGTGCAA
GC Content60.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterM
SubclusterM1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionLeTourneau University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Reindeer_1

Reindeer_2

Reindeer_3
(Lsr2-like DNA bridging protein)

Reindeer_4

Reindeer_5

Reindeer_6

Reindeer_7

Reindeer_8

Reindeer_9

Reindeer_10

Reindeer_11
(terminase, small subunit)

Reindeer_12
(terminase, large subunit)

Reindeer_13
(portal protein)

Reindeer_14
(capsid maturation protease)

Reindeer_15
(scaffolding protein)

Reindeer_16
(major capsid protein)

Reindeer_17
(head-to-tail adaptor)

Reindeer_18
(head-to-tail stopper)

Reindeer_19

Reindeer_20
(tail terminator)

Reindeer_21
(major tail protein)

Reindeer_22
(tail assembly chaperone)

Reindeer_23
(tail assembly chaperone)

Reindeer_24
(tape measure protein)

Reindeer_25
(minor tail protein)

Reindeer_26
(minor tail protein)

Reindeer_27
(minor tail protein)

Reindeer_28
(minor tail protein)

Reindeer_29
(minor tail protein)

Reindeer_30
(minor tail protein)

Reindeer_31

Reindeer_32

Reindeer_33

Reindeer_34

Reindeer_35
(lysin A)

Reindeer_36

Reindeer_37
(holin)

Reindeer_38
(lysin B)

Reindeer_39
(thioredoxin)

Reindeer_40

Reindeer_41

Reindeer_42

Reindeer_43

Reindeer_44

Reindeer_45

Reindeer_46

Reindeer_47

Reindeer_48

Reindeer_49
(tRNA nucleotidyltransferase)

Reindeer_50

Reindeer_51

Reindeer_52

Reindeer_53

Reindeer_54

Reindeer_55

Reindeer_56
(ssDNA binding protein, ERF family)

Reindeer_57

Reindeer_58
(RecB-like exonuclease/helicase)

Reindeer_59

Reindeer_60
(ClpP-like protease)

Reindeer_61

Reindeer_62

Reindeer_63

Reindeer_64

Reindeer_65

Reindeer_66

Reindeer_67

Reindeer_68

Reindeer_69
(ssDNA binding protein)

Reindeer_70

Reindeer_71
(DnaB-like dsDNA helicase)

Reindeer_72
(WhiB family transcription factor)

Reindeer_73
(Holliday junction resolvase)

Reindeer_74
(WhiB family transcription factor)

Reindeer_75

Reindeer_76
(thioredoxin)

Reindeer_77

Reindeer_78

Reindeer_79

Reindeer_80
(DnaQ-like (DNA polymerase III subunit))

Reindeer_81

Reindeer_82

Reindeer_83
(HNH endonuclease)

Reindeer_84
(PTPc tyrosine phosphatase)

Reindeer_85

Reindeer_86

Reindeer_87

Reindeer_88

Reindeer_89

Reindeer_90
(HNH endonuclease)

Reindeer_91

Reindeer_92

Reindeer_95

Reindeer_101

Reindeer_103

Reindeer_107

Reindeer_108
(ribonucleotide reductase)

Reindeer_117
(rtcB-like RNA ligase)

Reindeer_118
(ParB-like nuclease domain)

Reindeer_119
(membrane protein, Band-7-like)

Reindeer_120

Reindeer_121

Reindeer_122

Reindeer_123

Reindeer_124
(HNH endonuclease)

Reindeer_125

Reindeer_126

Reindeer_127

Reindeer_128
(DprA-like DNA processing chain A)

Reindeer_129
(metallophosphoesterase)

Reindeer_130

Reindeer_131

Reindeer_132

Reindeer_133
(tyrosine homologous recombinase)

Reindeer_134

Reindeer_135

Reindeer_136

Reindeer_137

Reindeer_138

Reindeer_139

Reindeer_140

Reindeer_141

Reindeer_142

Reindeer_143

Reindeer_144

Reindeer_145

Reindeer_146

Reindeer_147

Reindeer_148

Reindeer_149

Reindeer_150

Reindeer_151

Reindeer_152

Reindeer_153

Reindeer_154

Reindeer_155

Reindeer_156

Reindeer_157

Reindeer_158

Reindeer_159

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT658803
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 59
Pitt Freezer Box Grid# A6
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload