Gordonia phage Sampudon
Sampudon EM Picture
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Detailed Information for Phage Sampudon
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found BySampurna Lamichhane and Barak Adler
Year Found2020
Location FoundSaint Louis, MO USA
Finding InstitutionSt. Louis Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates38.56773 N, 90.42149 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 24, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage62
Genome length (bp)68500
Character of genome endsCircularly Permuted
GC Content58.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDV
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionQueensborough Community College
Annotation StatusIn GenBank
Number of Genes99
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Sampudon_1

Sampudon_2
(terminase)

Sampudon_3
(portal protein)

Sampudon_4
(hydrolase)

Sampudon_5

Sampudon_6
(minor tail protein)

Sampudon_7

Sampudon_8

Sampudon_9

Sampudon_10

Sampudon_11

Sampudon_12
(metalloprotease)

Sampudon_13

Sampudon_14

Sampudon_15
(minor capsid protein)

Sampudon_16
(major capsid protein)

Sampudon_17

Sampudon_18

Sampudon_19
(head-to-tail stopper)

Sampudon_20
(minor capsid protein)

Sampudon_21
(tail teminator)

Sampudon_22

Sampudon_23

Sampudon_24
(major tail protein)

Sampudon_25

Sampudon_26

Sampudon_27
(tape measure protein)

Sampudon_28
(minor tail protein)

Sampudon_29
(minor tail protein)

Sampudon_30
(minor tail protein)

Sampudon_31

Sampudon_32

Sampudon_33

Sampudon_34

Sampudon_35

Sampudon_36
(lysin A)

Sampudon_37

Sampudon_38

Sampudon_39

Sampudon_40

Sampudon_41

Sampudon_42

Sampudon_43

Sampudon_44

Sampudon_45

Sampudon_46

Sampudon_47

Sampudon_48

Sampudon_49

Sampudon_50

Sampudon_51

Sampudon_52

Sampudon_53

Sampudon_54

Sampudon_55

Sampudon_56

Sampudon_57

Sampudon_58

Sampudon_59

Sampudon_60
(DNA helicase)

Sampudon_61

Sampudon_62

Sampudon_63

Sampudon_64

Sampudon_65
(Cas4 family exonuclease)

Sampudon_66

Sampudon_67
(RecA-like DNA recombinase)

Sampudon_68

Sampudon_69

Sampudon_70
(HNH endonuclease)

Sampudon_71
(phosphatase)

Sampudon_72

Sampudon_73

Sampudon_74
(methyltransferase)

Sampudon_75

Sampudon_76
(oxidoreductase)

Sampudon_77

Sampudon_78

Sampudon_79

Sampudon_80
(DnaE-like DNA polymerase III alpha)

Sampudon_81
(MazG-like nucleotide pyrophosphohydrolase)

Sampudon_82

Sampudon_83

Sampudon_84
(ThyX-like thymidylate synthase)

Sampudon_85

Sampudon_86

Sampudon_87
(RuvC-like resolvase)

Sampudon_88
(lysin B)

Sampudon_89

Sampudon_90
(DNA primase/polymerase)

Sampudon_91

Sampudon_92

Sampudon_93

Sampudon_94

Sampudon_95

Sampudon_96

Sampudon_97

Sampudon_98

Sampudon_99

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR434021
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
GenBank File for PhameratorDownload