Detailed Information for Phage TpudiCK |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Clifford Thupuli |
Year Found | 2025 |
Location Found | Cape Town, South Africa |
Finding Institution | TASK South Africa |
Program | Unavailable |
From enriched soil sample? | Yes |
Isolation Temperature | 37°C |
GPS Coordinates | 33.95551 S, 18.46149 E Map |
Discovery Notes | The soil sample was taken from the flower bed outside the UCT MCB building. |
Naming Notes | it is my surname, THUPULI, and my initials, Clifford Kgololosego. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Aug 11, 2025 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina NextSeq 1000 |
Read Type | Single-end reads |
Read Length | 100 bp |
Approximate Shotgun Coverage | 3394 |
Genome length (bp) | 80851 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | ACCTCCTGCAA |
GC Content | 61.6% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | M |
Subcluster | M1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | TASK South Africa |
Annotation Status | Being Annotated (Expected completion by 2/11/2026) |
Plaque Notes | The plate had a mixture of both turbid and clear plaque. the turbid plaques were much larger in diameter compared to clear plaque. The 10-4 plate had about 152 plaque, of which less than 50% were turbid, and more than 50% were clear. |
Number of Genes | 139 |
Number of tRNAs | 20 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
Available Files |
EM Picture | Download |