Mycobacterium phage TpudiCK
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage TpudiCK
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByClifford Thupuli
Year Found2025
Location FoundCape Town, South Africa
Finding InstitutionTASK South Africa
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates33.95551 S, 18.46149 E Map
Discovery NotesThe soil sample was taken from the flower bed outside the UCT MCB building.
Naming Notesit is my surname, THUPULI, and my initials, Clifford Kgololosego.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 11, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage3394
Genome length (bp)80851
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceACCTCCTGCAA
GC Content61.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterM
SubclusterM1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionTASK South Africa
Annotation StatusBeing Annotated (Expected completion by 2/11/2026)
Plaque NotesThe plate had a mixture of both turbid and clear plaque. the turbid plaques were much larger in diameter compared to clear plaque. The 10-4 plate had about 152 plaque, of which less than 50% were turbid, and more than 50% were clear.
Number of Genes139
Number of tRNAs20
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

TpudiCK_1

TpudiCK_2

TpudiCK_3

TpudiCK_4

TpudiCK_5

TpudiCK_6

TpudiCK_7

TpudiCK_8

TpudiCK_9

TpudiCK_10

TpudiCK_11

TpudiCK_12

TpudiCK_13

TpudiCK_14

TpudiCK_15

TpudiCK_16

TpudiCK_17

TpudiCK_18

TpudiCK_19

TpudiCK_20

TpudiCK_21

TpudiCK_22

TpudiCK_23

TpudiCK_24

TpudiCK_25

TpudiCK_26

TpudiCK_27

TpudiCK_28

TpudiCK_29

TpudiCK_30

TpudiCK_31

TpudiCK_32

TpudiCK_33

TpudiCK_34

TpudiCK_35

TpudiCK_36

TpudiCK_37

TpudiCK_38

TpudiCK_39

TpudiCK_40 — tRNA
(gp40)

TpudiCK_41

TpudiCK_42

TpudiCK_43

TpudiCK_44

TpudiCK_45

TpudiCK_46

TpudiCK_47

TpudiCK_48

TpudiCK_49

TpudiCK_50

TpudiCK_51

TpudiCK_52

TpudiCK_53

TpudiCK_54

TpudiCK_55

TpudiCK_56

TpudiCK_57

TpudiCK_58

TpudiCK_59

TpudiCK_60

TpudiCK_61

TpudiCK_62

TpudiCK_63

TpudiCK_64

TpudiCK_65

TpudiCK_66

TpudiCK_67

TpudiCK_68

TpudiCK_69

TpudiCK_70

TpudiCK_71

TpudiCK_72

TpudiCK_73

TpudiCK_74

TpudiCK_75

TpudiCK_76

TpudiCK_77

TpudiCK_78

TpudiCK_79

TpudiCK_80

TpudiCK_81

TpudiCK_82

TpudiCK_83

TpudiCK_84

TpudiCK_85

TpudiCK_86

TpudiCK_87

TpudiCK_88

TpudiCK_89

TpudiCK_90

TpudiCK_91

TpudiCK_92

TpudiCK_93 — tRNA
(gp93)

TpudiCK_94 — tRNA
(gp94)

TpudiCK_95

TpudiCK_96 — tRNA
(gp96)

TpudiCK_97 — tRNA
(gp97)

TpudiCK_98 — tRNA
(gp98)

TpudiCK_99 — tRNA
(gp99)

TpudiCK_100 — tRNA
(gp100)

TpudiCK_101 — tRNA
(gp101)

TpudiCK_102 — tRNA
(gp102)

TpudiCK_103

TpudiCK_104 — tRNA
(gp104)

TpudiCK_105 — tRNA
(gp105)

TpudiCK_106 — tRNA
(gp106)

TpudiCK_107

TpudiCK_108 — tRNA
(gp108)

TpudiCK_109

TpudiCK_110 — tRNA
(gp110)

TpudiCK_111 — tRNA
(gp111)

TpudiCK_112 — tRNA
(gp112)

TpudiCK_113 — tRNA
(gp113)

TpudiCK_114 — tRNA
(gp114)

TpudiCK_115 — tRNA
(gp115)

TpudiCK_116

TpudiCK_117

TpudiCK_118

TpudiCK_119

TpudiCK_120

TpudiCK_121

TpudiCK_122

TpudiCK_123

TpudiCK_124

TpudiCK_125

TpudiCK_126

TpudiCK_127

TpudiCK_128

TpudiCK_129

TpudiCK_130

TpudiCK_131

TpudiCK_132

TpudiCK_133

TpudiCK_134

TpudiCK_135

TpudiCK_136

TpudiCK_137

TpudiCK_138

TpudiCK_139

TpudiCK_140

TpudiCK_141

TpudiCK_142

TpudiCK_143

TpudiCK_144

TpudiCK_145

TpudiCK_146

TpudiCK_147

TpudiCK_148

TpudiCK_149

TpudiCK_150

TpudiCK_151

TpudiCK_152

TpudiCK_153

TpudiCK_154

TpudiCK_155

TpudiCK_156

TpudiCK_157

TpudiCK_158

TpudiCK_159

Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
EM PictureDownload