Mycobacterium phage TpudiCK
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| Detailed Information for Phage TpudiCK | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Clifford Thupuli |
| Year Found | 2025 |
| Location Found | Cape Town, South Africa |
| Finding Institution | TASK South Africa |
| Program | Unavailable |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 33.95551 S, 18.46149 E Map |
| Discovery Notes | The soil sample was taken from the flower bed outside the UCT MCB building. |
| Naming Notes | it is my surname, THUPULI, and my initials, Clifford Kgololosego. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 11, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Single-end reads |
| Read Length | 100 bp |
| Approximate Shotgun Coverage | 3394 |
| Genome length (bp) | 80851 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | ACCTCCTGCAA |
| GC Content | 61.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | M |
| Subcluster | M1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewRoseMarie (None) Auspice (M1) Bongo (M1) Bricole (M1) Diminimus (M1) Dulcita (M1) FreakyGoo (M1) Glaske16 (M1) IPhane7 (M1) Izel (M1) KleverKiS (M1) LilhomieP (M1) PegLeg (M1) Reindeer (M1) Skinny (M1) SlimJimmy (M1) TpudiCK (M1) TyDawg (M1) Aziz (M2) Estes (M2) GardenSalsa (M2) GenevaB15 (M2) MrMagoo (M2) Rey (M2) Nanosmite (M3) |
| Annotating Institution | TASK South Africa |
| Annotation Status | Being Annotated (Expected completion by 2/11/2026) |
| Plaque Notes | The plate had a mixture of both turbid and clear plaque. the turbid plaques were much larger in diameter compared to clear plaque. The 10-4 plate had about 152 plaque, of which less than 50% were turbid, and more than 50% were clear. |
| Has been Phamerated? | No |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| Available Files | |
| EM Picture | Download |