Gordonia phage BetterYeti
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Detailed Information for Phage BetterYeti
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByE.Ratner, E.James, Z.Farnum, L.Martin
Year Found2024
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.446884 N, 79.952998 W Map
Discovery NotesElizabeth A. James, Zora K.Y. Farnum, and Loishooki R. Martin.

Collected off the front lawn of a University of Pittsburgh dormitory.
Dry soil, fine and sandy, sunny, 2pm.
Naming NotesWe mutually decided on the name. Yeti was taken, so we had to improvise.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 2, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage3659
Genome length (bp)60438
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCCGCTCT
GC Content51.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDJ
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusQC Complete
Plaque NotesSatisfiable bacteria lawn with evident phage activity. We chose our 10E(-6) dilution to proceed further with phage identification and experimentation.
MorphotypeSiphoviridae
Number of Genes90
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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BetterYeti_1

BetterYeti_2

BetterYeti_3
(hydrolase)

BetterYeti_4

BetterYeti_5

BetterYeti_6

BetterYeti_7

BetterYeti_8

BetterYeti_9

BetterYeti_10

BetterYeti_11

BetterYeti_12
(HNH endonuclease)

BetterYeti_13
(lysin A)

BetterYeti_14
(holin)

BetterYeti_15

BetterYeti_16

BetterYeti_17
(terminase)

BetterYeti_18

BetterYeti_19

BetterYeti_20
(portal protein)

BetterYeti_21

BetterYeti_22
(major capsid and protease fusion protein)

BetterYeti_23

BetterYeti_24
(tail terminator)

BetterYeti_25
(major tail protein)

BetterYeti_26

BetterYeti_27
(major tail protein)

BetterYeti_28

BetterYeti_29

BetterYeti_30
(lysin B)

BetterYeti_31

BetterYeti_32
(tape measure protein)

BetterYeti_33
(minor tail protein)

BetterYeti_34
(minor tail protein)

BetterYeti_35

BetterYeti_36

BetterYeti_37

BetterYeti_38

BetterYeti_39

BetterYeti_40

BetterYeti_41

BetterYeti_42

BetterYeti_43

BetterYeti_44

BetterYeti_45

BetterYeti_46

BetterYeti_47

BetterYeti_48

BetterYeti_49

BetterYeti_50

BetterYeti_51

BetterYeti_52

BetterYeti_53

BetterYeti_54

BetterYeti_55

BetterYeti_56

BetterYeti_57

BetterYeti_58

BetterYeti_59

BetterYeti_60

BetterYeti_61
(DNA primase/polymerase)

BetterYeti_62

BetterYeti_63

BetterYeti_64
(deoxycytidylate deaminase)

BetterYeti_65

BetterYeti_66
(SSB protein)

BetterYeti_67

BetterYeti_68
(ThyX-like thymidylate synthase)

BetterYeti_69

BetterYeti_70

BetterYeti_71

BetterYeti_72

BetterYeti_73

BetterYeti_74

BetterYeti_75

BetterYeti_76

BetterYeti_77

BetterYeti_78

BetterYeti_79

BetterYeti_80

BetterYeti_81

BetterYeti_82

BetterYeti_83

BetterYeti_84

BetterYeti_85
(DNA helicase)

BetterYeti_86
(HNH endonuclease)

BetterYeti_87
(VRR-Nuc domain protein)

BetterYeti_88
(Cas4 family exonuclease)

BetterYeti_89

BetterYeti_90

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 213
Pitt Freezer Box Grid# F7
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload