Gordonia phage Duffington
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Detailed Information for Phage Duffington
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAlex Fisher
Year Found2017
Location FoundCaldwell, ID USA
Finding InstitutionCollege of Idaho
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates43.652523 N, 116.677512 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 16, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage785
Genome length (bp)61343
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCCGCTCT
GC Content51.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDJ
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionCollege of Idaho
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Duffington_1

Duffington_2

Duffington_3
(hydrolase)

Duffington_4

Duffington_5

Duffington_6

Duffington_7

Duffington_8

Duffington_9

Duffington_10
(hydrolase)

Duffington_11

Duffington_12
(HNH endonuclease)

Duffington_13
(lysin A)

Duffington_14
(holin)

Duffington_15

Duffington_16

Duffington_17
(terminase)

Duffington_18

Duffington_19

Duffington_20
(portal protein)

Duffington_21

Duffington_22
(capsid & capsid maturation protease)

Duffington_23

Duffington_24

Duffington_25
(major tail protein)

Duffington_26

Duffington_27
(major tail protein)

Duffington_28

Duffington_29

Duffington_30
(lysin B)

Duffington_31

Duffington_32
(tape measure protein)

Duffington_33
(minor tail protein)

Duffington_34
(minor tail protein)

Duffington_35

Duffington_36

Duffington_37

Duffington_38

Duffington_39

Duffington_40

Duffington_41

Duffington_42

Duffington_43

Duffington_44

Duffington_45

Duffington_46

Duffington_47

Duffington_48

Duffington_49

Duffington_50

Duffington_51

Duffington_52

Duffington_53

Duffington_54

Duffington_55

Duffington_56

Duffington_57

Duffington_58

Duffington_59
(DNA primase/polymerase)

Duffington_60

Duffington_61

Duffington_62
(deoxycytidylate deaminase)

Duffington_63

Duffington_64

Duffington_65

Duffington_66
(gycosyltranserase)

Duffington_67
(ThyX-like thymidylate synthase)

Duffington_68

Duffington_69

Duffington_70

Duffington_71

Duffington_72

Duffington_73

Duffington_74

Duffington_75

Duffington_76

Duffington_77

Duffington_78

Duffington_79

Duffington_80

Duffington_81

Duffington_82

Duffington_83

Duffington_84

Duffington_85

Duffington_86

Duffington_87
(DNA helicase)

Duffington_88
(HNH endonuclease)

Duffington_89
(hydrolase)

Duffington_90
(exonuclease)

Duffington_91
(helix-turn-helix DNA binding domain protein)

Duffington_92

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK376957
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 73
Pitt Freezer Box Grid# C8
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload