| Detailed Information for Phage DeGene | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Aaron Sun |
| Year Found | 2025 |
| Location Found | Pittsburgh, PA United States |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.45324 N, 79.951273 W Map |
| Discovery Notes | Group members: Aaron Sun, Andrew Chan, Michael Caprice This phage was discovered during Spring semester of 2025. The sample was collected from a bush outside of an apartment complex. The soil was soft and fine, with a bit of mulch mixed in with it. |
| Naming Notes | Named in honor of Cooper DeJean, due to his impressive performance at the 2025 Superbowl. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 8, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Paired-end reads |
| Read Length | 300 bp |
| Approximate Shotgun Coverage | 9304 |
| Genome length (bp) | 59928 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCCGCTCT |
| GC Content | 51.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DJ |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAflac AlainaMarie Aloe25 Arataki Artorias Avazak BetterYeti BluerMoon Bugg Burley Captrips Capybara ChickyNuggy Chikenjars Citrus Conley Crocheter Dancer DeGene Demure Dialga Duffington Eddiemania EndAve Fazel Figliar FortCran Gill Gravy Gusicorn Hortihabitatio Hydrus Jodelie19 JulesRay Kenosha Kerry Madvan Magel MajinBuu Mossy Mysticmoon Nadmeg Nithya NoPickles Odesza OhMyWard OlgasClover Perkunas PestoPenguin Petito Phepper Pherobrine Rickmore Roney Runhaar Schwartz33 Secretariat ShaggyRogers Talon44 Tanis TenaciousP Trufflozitus Untouchable Vardy Zeph |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Being Annotated (Expected completion by 2/8/2026) |
| Number of Genes | 97 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDeGene_1 DeGene_2 DeGene_3 DeGene_4 DeGene_5 DeGene_6 DeGene_7 DeGene_8 DeGene_9 DeGene_10 DeGene_11 DeGene_12 DeGene_13 DeGene_14 DeGene_15 DeGene_16 DeGene_17 DeGene_18 DeGene_19 DeGene_20 DeGene_21 DeGene_22 DeGene_23 DeGene_24 DeGene_25 DeGene_26 DeGene_27 DeGene_28 DeGene_29 DeGene_30 DeGene_31 DeGene_32 DeGene_33 DeGene_34 DeGene_35 DeGene_36 DeGene_37 DeGene_38 DeGene_39 DeGene_40 DeGene_41 DeGene_42 DeGene_43 DeGene_44 DeGene_45 DeGene_46 DeGene_47 DeGene_48 DeGene_49 DeGene_50 DeGene_51 DeGene_52 DeGene_53 DeGene_54 DeGene_55 DeGene_56 DeGene_57 DeGene_58 DeGene_59 DeGene_60 DeGene_61 DeGene_62 DeGene_63 DeGene_64 DeGene_65 DeGene_66 DeGene_67 DeGene_68 DeGene_69 DeGene_70 DeGene_71 DeGene_72 DeGene_73 DeGene_74 DeGene_75 DeGene_76 DeGene_77 DeGene_78 DeGene_79 DeGene_80 DeGene_81 DeGene_82 DeGene_83 DeGene_84 DeGene_85 DeGene_86 DeGene_87 DeGene_88 DeGene_89 DeGene_90 DeGene_91 DeGene_92 DeGene_93 DeGene_94 DeGene_95 DeGene_96 DeGene_97 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 216 |
| Pitt Freezer Box Grid# | C10 |
| Available Files | |
| Plaque Picture | Download |
