| Detailed Information for Phage RicoCaldo |
| Discovery Information |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Ricardo Cuello |
| Year Found | 2023 |
| Location Found | Quincy, MA United States |
| Finding Institution | Eastern Nazarene College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 27°C |
| GPS Coordinates | 42.271501 N, 71.011677 W Map |
| Discovery Notes | Direct Isolation from grass sample. |
| Naming Notes | Rico Caldo means "Delicious Soup" in spanish. It was a name given to me by some friends in Dominican Republic due to it sounding similar to my first name Ricardo. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 8, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1028 |
| Genome length (bp) | 54524 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | EK |
| Subcluster | EK2 |
| Cluster Life Cycle | Unknown |
| Lysogeny Notes | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Eastern Nazarene College |
| Annotation Status | In GenBank |
| Plaque Notes | Capsid Size: 63.759nm
Tail Size: 12.765nm |
| Morphotype | Podoviridae |
| Number of Genes | 55 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PP946910 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
5.1 x 10^8 pfu/mL |
| Pitt Freezer Box# |
173 |
| Pitt Freezer Box Grid# |
D5 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
