Microbacterium phage Tyrumbra
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Detailed Information for Phage Tyrumbra
Discovery Information
Isolation HostMicrobacterium paraoxydans NRRL B-14843
Found ByChristopher Jentzsch
Year Found2018
Location FoundHudson, WI USA
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature28°C
GPS Coordinates44.973333 N, 92.731667 W Map
Discovery Notescollected on sept 9 at 4:54pm in a garden in Hudson WI.The humidity was 53% on a cloudy day. The soil was watered every 3 days.
Naming NotesThe name came from my D&D campaign
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 18, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage205
Genome length (bp)53975
Character of genome endsCircularly Permuted
GC Content68.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEC
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque Notessmall uniform evenly distributed plaques, lacking halos or cloudyness.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Tyrumbra_1
(terminase small subunit)

Tyrumbra_2

Tyrumbra_3
(terminase large subunit)

Tyrumbra_4

Tyrumbra_5

Tyrumbra_6

Tyrumbra_7

Tyrumbra_8

Tyrumbra_9

Tyrumbra_10

Tyrumbra_11

Tyrumbra_12

Tyrumbra_13

Tyrumbra_14

Tyrumbra_15

Tyrumbra_16

Tyrumbra_17

Tyrumbra_18
(portal protein)

Tyrumbra_19

Tyrumbra_20

Tyrumbra_21
(minor capsid protein)

Tyrumbra_22

Tyrumbra_23
(capsid maturation protease)

Tyrumbra_24

Tyrumbra_25

Tyrumbra_26

Tyrumbra_27

Tyrumbra_28

Tyrumbra_29
(head-to-tail adaptor)

Tyrumbra_30

Tyrumbra_31

Tyrumbra_32

Tyrumbra_33

Tyrumbra_34
(tape measure protein)

Tyrumbra_35
(minor tail protein)

Tyrumbra_36
(minor tail protein)

Tyrumbra_37
(minor tail protein)

Tyrumbra_38
(minor tail protein)

Tyrumbra_39

Tyrumbra_40

Tyrumbra_41

Tyrumbra_42
(lysin A)

Tyrumbra_43

Tyrumbra_44
(membrane protein)

Tyrumbra_45
(membrane protein)

Tyrumbra_46
(membrane protein)

Tyrumbra_47
(RusA-like resolvase)

Tyrumbra_48
(exonuclease)

Tyrumbra_49
(ERF family ssDNA binding protein)

Tyrumbra_50

Tyrumbra_51

Tyrumbra_52
(helix-turn-helix DNA binding domain protein)

Tyrumbra_53

Tyrumbra_54
(HNH endonuclease)

Tyrumbra_55

Tyrumbra_56

Tyrumbra_57

Tyrumbra_58

Tyrumbra_59

Tyrumbra_60

Tyrumbra_61

Tyrumbra_62

Tyrumbra_63
(ssDNA binding protein)

Tyrumbra_64

Tyrumbra_65
(helix-turn-helix DNA binding domain protein)

Tyrumbra_66
(helix-turn-helix DNA binding domain protein)

Tyrumbra_67

Tyrumbra_68

Tyrumbra_69
(membrane protein)

Tyrumbra_70
(membrane protein)

Tyrumbra_71

Tyrumbra_72

Tyrumbra_73

Tyrumbra_74

Tyrumbra_75

Tyrumbra_76

Tyrumbra_77

Tyrumbra_78

Tyrumbra_79
(glycosyltransferase)

Tyrumbra_80

Tyrumbra_81

Tyrumbra_82
(RNA polymerase sigma factor)

Tyrumbra_83
(ParB-like nuclease domain protein)

Tyrumbra_84
(glycosyltransferase)

Tyrumbra_85
(UDP-glucose dehydrogenase)

Tyrumbra_86
(AAA-ATPase)

Tyrumbra_87

Tyrumbra_88

Tyrumbra_89

Tyrumbra_90

Tyrumbra_91

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN175603
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 88
Pitt Freezer Box Grid# B2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload