The Actinobacteriophage Database

Gordonia phage Ekhein

Know something about this phage that we don't? Modify its data.

Detailed Information for Phage Ekhein
Discovery Information
Isolation Host	Gordonia terrae 3612
Found By	Trezalka Budinsky
Year Found	2019
Location Found	Pittsburgh, PA United States
Finding Institution	University of Pittsburgh
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	30°C
GPS Coordinates	40.440378 N, 79.955711 W Map
Discovery Notes	The soil sample was taken from the Oakland Avenue Farm, which is located on Oakland Avenue across from Bouquet Gardens. The soil was partly dry, due to the fact that we have not had rain in a while. The soil was not compact, therefore, very loose and easy to collect. The weather at the time of collection was extremely hot, dry, and sunny. The area of collection was located specifically in a plot of garden soil, which was a wide, open space.
Naming Notes	The ancient Greek word for "restrain" - our phage's plaques are restrained to a tiny area. It is also the origin of the name Hektor - a famous Trojan hero from the Iliad.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 28, 2020
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	675
Genome length (bp)	76612
Character of genome ends	Direct Terminal Repeat
Direct Terminal Repeat Length	191 bp
GC Content	58.9%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	CS
Subcluster	CS2
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Amore2 (CS1) Austin (CS1) GMA7 (CS1) GTE7 (CS1) HayZem (CS1) Adgers (CS2) Barbochs (CS2) Beaver (CS2) BenoitCattle (CS2) BigShaq (CS2) BirksAndSocks (CS2) Boneham (CS2) Breezic (CS2) Butterball (CS2) CathyBurgh (CS2) Chelms (CS2) Dakiti (CS2) Diabla (CS2) Eggsie (CS2) Ekhein (CS2) Exiguo (CS2) FelixAlejandro (CS2) Flakey (CS2) Gorko (CS2) GourdThymes (CS2) Hotorobo (CS2) Jellybones (CS2) John316 (CS2) Linetti (CS2) Lizzo (CS2) Monty (CS2) Msay19 (CS2) PierreThree (CS2) PokyPuppy (CS2) Poland (CS2) RemRem (CS2) RoyalG (CS2) Sam12 (CS2) Sombrero (CS2) Squibbles (CS2) SteveFrench (CS2) Anamika (CS3) Berries (CS3) Bianmat (CS3) Charianelly (CS3) Damp (CS3) GalacticEye (CS3) Guillaume (CS3) Hail2Pitt (CS3) Harambe (CS3) Hello (CS3) Jams (CS3) Jormungandr (CS3) Kaseim (CS3) Lahirium (CS3) Lidong (CS3) Luker (CS3) Minos (CS3) MrWormie (CS3) Neoevie (CS3) Newt (CS3) Nimi13 (CS3) Shelley (CS3) Sticker17 (CS3) Teal (CS3) Woes (CS3) ASerpRocky (CS4) Benczkowski14 (CS4) Demosthenes (CS4) Hollow (CS4) Katyusha (CS4) Kvothe (CS4) Niagara (CS4) Philon9 (CS4) Teatealatte (CS4) Teech (CS4) Tredge (CS4)
Annotating Institution	Universidad Autónoma de Nuevo León
Annotation Status	In GenBank
Plaque Notes	Small clear plaques - ranging from 0.5 to 2.0mm in diameter.
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View Ekhein_1 Ekhein_2 Ekhein_3 Ekhein_4 Ekhein_5 Ekhein_6 Ekhein_7 Ekhein_8 (DNA primase) Ekhein_9 Ekhein_10 (terminase) Ekhein_11 (portal protein) Ekhein_12 (hydrolase) Ekhein_13 Ekhein_14 (capsid maturation protease) Ekhein_15 (capsid decoration protein) Ekhein_16 (major capsid protein) Ekhein_17 Ekhein_18 Ekhein_19 (head-to-tail adaptor) Ekhein_20 Ekhein_21 Ekhein_22 Ekhein_23 (major tail protein) Ekhein_25 (tail assembly chaperone) Ekhein_26 (tail assembly chaperone) Ekhein_27 (tape measure protein) Ekhein_28 (minor tail protein) Ekhein_29 (minor tail protein) Ekhein_30 (minor tail protein) Ekhein_31 Ekhein_32 (holin) Ekhein_33 Ekhein_34 (lysin A, N-acetylmuramoyl-L-alanine amidase domain) Ekhein_35 (lysin A, protease M23 domain) Ekhein_37 Ekhein_38 Ekhein_39 Ekhein_40 Ekhein_41 (Cas4 family exonuclease) Ekhein_42 (WhiB family transcription factor) Ekhein_43 Ekhein_44 Ekhein_45 Ekhein_46 Ekhein_47 (DNA methylase) Ekhein_48 Ekhein_49 Ekhein_50 (lysin B) Ekhein_51 (MazG-like nucleotide pyrophosphohydrolase) Ekhein_52 Ekhein_53 (RusA-like resolvase) Ekhein_54 Ekhein_55 (DNA polymerase III sliding clamp) Ekhein_56 (DnaQ-like DNA polymerase III subunit) Ekhein_57 (helix-turn-helix DNA binding protein) Ekhein_58 Ekhein_59 (DNA helicase) Ekhein_60 Ekhein_61 Ekhein_62 Ekhein_63 (helix-turn-helix DNA binding protein) Ekhein_64 Ekhein_65 Ekhein_66 Ekhein_67 Ekhein_68 Ekhein_69 Ekhein_70 Ekhein_71 Ekhein_72 Ekhein_73 Ekhein_74 Ekhein_75 Ekhein_76 Ekhein_77 Ekhein_78 Ekhein_79 Ekhein_80 Ekhein_81 Ekhein_82 Ekhein_83 Ekhein_84 (HNH endonuclease) Ekhein_85 Ekhein_86 Ekhein_87 Ekhein_88 Ekhein_89 Ekhein_90 (CobT-like cobalamin biosynthesis protein) Ekhein_91 (AAA-ATPase) Ekhein_92 Ekhein_93 Ekhein_94 Ekhein_95 Ekhein_96 Ekhein_97 Ekhein_98 Ekhein_99 Ekhein_100 Ekhein_102 Ekhein_103 Ekhein_104 Ekhein_105 Ekhein_106 Ekhein_107 Ekhein_108 Ekhein_109 Ekhein_110 Ekhein_111
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MW507132
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	114
Pitt Freezer Box Grid#	B8
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

Click to View

Click to View