Gordonia phage Hotorobo
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Detailed Information for Phage Hotorobo
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJameson Davis
Year Found2015
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.440408 N, 79.955754 W Map
Discovery Notes82 degrees, tightly packed, moderately moist, and near a tomato plant
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 16, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage473
Genome length (bp)76972
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content58.9%
Sequencing Notesat position 70,488 about 24% of reads have an A rather than the consensus G

mixed sample, 10% reads blast to SoilAssassin/Attis
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesClear plaques which are about 2 mm in diameter.
Number of Genes109
Has been Phamerated?Yes
Gene List

Click to View

Hotorobo_1

Hotorobo_2

Hotorobo_3

Hotorobo_4

Hotorobo_5

Hotorobo_6

Hotorobo_7

Hotorobo_8

Hotorobo_9

Hotorobo_10
(terminase)

Hotorobo_11
(portal protein)

Hotorobo_12
(structural protein)

Hotorobo_13

Hotorobo_14
(capsid maturation protease)

Hotorobo_15
(scaffolding protein)

Hotorobo_16
(major capsid protein)

Hotorobo_17
(head-to-tail connector protein)

Hotorobo_18
(head-to-tail connector protein)

Hotorobo_19
(head-to-tail connector protein)

Hotorobo_20
(head-to-tail connector protein)

Hotorobo_21
(head-to-tail connector protein)

Hotorobo_22
(head-to-tail connector protein)

Hotorobo_23
(major tail protein)

Hotorobo_25
(tail assembly chaperone)

Hotorobo_26
(tail assembly chaperone)

Hotorobo_27
(tape measure protein)

Hotorobo_28
(minor tail protein)

Hotorobo_29
(minor tail protein)

Hotorobo_30
(minor tail protein)

Hotorobo_31
(membrane protein)

Hotorobo_32
(membrane protein)

Hotorobo_33
(membrane protein)

Hotorobo_34
(lysin A)

Hotorobo_35
(lysin A)

Hotorobo_36
(membrane protein)

Hotorobo_37
(membrane protein)

Hotorobo_38
(membrane protein)

Hotorobo_39
(holin)

Hotorobo_40
(endonuclease/helicase)

Hotorobo_41

Hotorobo_42

Hotorobo_43

Hotorobo_44

Hotorobo_45

Hotorobo_46
(DNA methylase)

Hotorobo_47

Hotorobo_48

Hotorobo_49
(lysin B)

Hotorobo_50
(MazG)

Hotorobo_51

Hotorobo_52

Hotorobo_53

Hotorobo_54

Hotorobo_55
(DNA polymerase III beta subunit)

Hotorobo_56
(exonuclease)

Hotorobo_57
(HTH DNA-binding protein)

Hotorobo_58

Hotorobo_59
(DNA helicase)

Hotorobo_60

Hotorobo_61
(zinc-finger DNA binding protein)

Hotorobo_62

Hotorobo_63

Hotorobo_64

Hotorobo_65

Hotorobo_66

Hotorobo_67

Hotorobo_68

Hotorobo_69

Hotorobo_70

Hotorobo_71

Hotorobo_72

Hotorobo_73

Hotorobo_74

Hotorobo_75

Hotorobo_76

Hotorobo_77

Hotorobo_78

Hotorobo_79

Hotorobo_80

Hotorobo_81

Hotorobo_82

Hotorobo_83

Hotorobo_84
(HNH endonuclease)

Hotorobo_85

Hotorobo_86

Hotorobo_87

Hotorobo_88

Hotorobo_89

Hotorobo_90
(cobalamin biosynthesis protein)

Hotorobo_91
(AAA-ATPase)

Hotorobo_92

Hotorobo_93

Hotorobo_94

Hotorobo_95

Hotorobo_96

Hotorobo_97

Hotorobo_98

Hotorobo_99

Hotorobo_100

Hotorobo_101

Hotorobo_102

Hotorobo_103

Hotorobo_104

Hotorobo_105

Hotorobo_106

Hotorobo_107

Hotorobo_108

Hotorobo_109

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU963245
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 2
Pitt Freezer Box Grid# F2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Final DNAMaster FileDownload