Gordonia phage ClamChowder
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Detailed Information for Phage ClamChowder
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAlly Stalzer, Rylie Rice, Lauryn Zessin
Year Found2022
Location FoundPalmyra, NE United States
Finding InstitutionDoane University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.71323 N, 96.44889 W Map
Naming NotesOur teacher's name is Bowder so we picked a name to rhyme with it.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 17, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage589
Genome length (bp)59514
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionDoane University
Annotation StatusIn GenBank
Has been Phamerated?Yes
Gene List

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ClamChowder_1
(Terminase small subunit)

ClamChowder_2

ClamChowder_3

ClamChowder_4

ClamChowder_5
(Terminase large subunit)

ClamChowder_6

ClamChowder_7

ClamChowder_8
(ASC-1 transcription coactivator)

ClamChowder_9

ClamChowder_10
(polynucleotide kinase)

ClamChowder_11

ClamChowder_12
(portal protein)

ClamChowder_13

ClamChowder_14
(ADP-ribosyltransferase)

ClamChowder_15

ClamChowder_16

ClamChowder_17
(ribbon-helix-helix DNA binding domain protein)

ClamChowder_18

ClamChowder_19
(RNA ligase)

ClamChowder_20

ClamChowder_21
(major capsid hexamer protein)

ClamChowder_22
(major capsid pentamer protein)

ClamChowder_23

ClamChowder_24
(major tail protein)

ClamChowder_25
(head-to-tail adaptor)

ClamChowder_26

ClamChowder_27

ClamChowder_28

ClamChowder_29
(tail assembly chaperone)

ClamChowder_30

ClamChowder_31
(tape measure protein)

ClamChowder_32
(minor tail protein)

ClamChowder_33
(minor tail protein)

ClamChowder_34

ClamChowder_35
(minor tail protein)

ClamChowder_36

ClamChowder_37

ClamChowder_38
(minor tail protein)

ClamChowder_39

ClamChowder_40

ClamChowder_41
(lysin A)

ClamChowder_42

ClamChowder_43

ClamChowder_44

ClamChowder_45

ClamChowder_46
(lysin B)

ClamChowder_47
(serine integrase)

ClamChowder_48

ClamChowder_49
(tyrosine integrase)

ClamChowder_50
(immunity repressor)

ClamChowder_51
(helix-turn-helix DNA binding domain protein)

ClamChowder_52

ClamChowder_53

ClamChowder_54

ClamChowder_55

ClamChowder_56
(RecE-like exonuclease)

ClamChowder_57
(RecT-like DNA pairing protein)

ClamChowder_58

ClamChowder_59

ClamChowder_60

ClamChowder_61
(DNA methyltransferase)

ClamChowder_62
(helix-turn-helix DNA binding domain protein)

ClamChowder_63
(DNA binding protein)

ClamChowder_64

ClamChowder_65
(RuvC-like resolvase)

ClamChowder_66

ClamChowder_67

ClamChowder_68

ClamChowder_69

ClamChowder_70

ClamChowder_71

ClamChowder_72

ClamChowder_73
(histidine triad nucleotide binding protein)

ClamChowder_74
(PnuC-like nicotinamide riboside transporter)

ClamChowder_75

ClamChowder_76

ClamChowder_77

ClamChowder_78

ClamChowder_79

ClamChowder_80

ClamChowder_81

ClamChowder_82

ClamChowder_83

ClamChowder_84
(DNA methyltransferase)

ClamChowder_85

ClamChowder_86

ClamChowder_87
(DnaJ-like chaperonin)

ClamChowder_88
(excise)

ClamChowder_89

ClamChowder_90

ClamChowder_91

ClamChowder_92

ClamChowder_93

ClamChowder_94

ClamChowder_95

ClamChowder_96

ClamChowder_97

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR253897
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 163
Pitt Freezer Box Grid# G9
Available Files
GenBank File for PhameratorDownload