Gordonia phage Valary
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Detailed Information for Phage Valary
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJennifer Van Dalen
Year Found2016
Location FoundGrand Rapids, MI USA
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.931013, -85.583408 Map
Discovery NotesThis phage was found in a garden, from soil under a squash plant.
Naming NotesValary is a combination of "Vancouver" and "Calgary."
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 4, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage338
Genome length (bp)59448
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionGettysburg College
Annotation StatusIn GenBank
Plaque NotesThe plaques were clear circles with distinct edges, generally 1.5-2.5 mm in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Valary_1
(helix-turn-helix DNA binding domain protein)

Valary_2

Valary_3

Valary_4

Valary_5
(terminase)

Valary_6

Valary_7

Valary_8
(helix-turn-helix DNA binding domain protein)

Valary_9

Valary_10

Valary_11
(polynucleotide kinase)

Valary_12

Valary_13
(portal protein)

Valary_14

Valary_15
(capsid maturation protease and MuF-like fusion protein)

Valary_16

Valary_17

Valary_18

Valary_19

Valary_20
(RNA ligase)

Valary_21

Valary_22
(major capsid hexamer protein)

Valary_23

Valary_24

Valary_25
(major tail protein)

Valary_26
(head-to-tail adaptor)

Valary_27

Valary_28

Valary_29

Valary_30
(tail assembly chaperone)

Valary_31

Valary_32
(tape measure protein)

Valary_33
(minor tail protein)

Valary_34
(minor tail protein)

Valary_35

Valary_36
(minor tail protein)

Valary_37

Valary_38
(minor tail protein)

Valary_39

Valary_40

Valary_41
(lysin A)

Valary_42
(holin)

Valary_43

Valary_44

Valary_45

Valary_46
(lysin B)

Valary_47
(integrase)

Valary_48

Valary_49
(integrase)

Valary_50
(immunity repressor)

Valary_51
(helix-turn-helix DNA binding domain protein)

Valary_52

Valary_53

Valary_54

Valary_55

Valary_56
(RecE-like exonuclease)

Valary_57
(RecT-like ssDNA binding protein)

Valary_58

Valary_59

Valary_60
(DNA methyltransferase)

Valary_61
(helix-turn-helix DNA binding domain protein)

Valary_62
(helix-turn-helix DNA binding domain protein)

Valary_63

Valary_64
(RuvC-like resolvase)

Valary_65

Valary_66

Valary_67

Valary_68

Valary_69

Valary_70

Valary_71

Valary_72

Valary_73
(nicotinamide riboside transporter)

Valary_74

Valary_75

Valary_76

Valary_77

Valary_78

Valary_79

Valary_80

Valary_81

Valary_82

Valary_83
(DNA methylase)

Valary_84

Valary_85

Valary_86
(HNH endonuclease)

Valary_87
(helix-turn-helix DNA binding domain protein)

Valary_88

Valary_89

Valary_90

Valary_91

Valary_92

Valary_93

Valary_94

Valary_95

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK864267
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.0 x 10^7 pfu/mL
Date of SEA Lysate Titering Nov 30, 2016
Pitt Freezer Box# 39
Pitt Freezer Box Grid# B2
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload