Gordonia phage PinkCoffee
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Detailed Information for Phage PinkCoffee
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByPeyton Hastings
Year Found2020
Location FoundManhattan, KS United States
Finding InstitutionKansas State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature26°C
GPS Coordinates39.1865 N, 96.5767 W Map
Discovery NotesSoil was collected from a shaded, grassy area near a heavily crowded area. The location was fairly damp and near a bench.
Naming NotesPink is my favorite color, and coffee is my favorite drink. I decided to put the two words together to name my phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2071
Genome length (bp)58559
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionKansas State University
Annotation StatusIn GenBank
Has been Phamerated?Yes
Gene List

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PinkCoffee_1
(helix-turn-helix DNA binding domain protein)

PinkCoffee_2

PinkCoffee_3

PinkCoffee_4

PinkCoffee_5
(terminase)

PinkCoffee_6

PinkCoffee_7

PinkCoffee_8
(ASC-1 transcription coactivator)

PinkCoffee_9

PinkCoffee_10
(polynucleotide kinase)

PinkCoffee_11

PinkCoffee_12
(portal protein)

PinkCoffee_13

PinkCoffee_14
(capsid maturation protease)

PinkCoffee_15

PinkCoffee_16

PinkCoffee_17
(ribbon-helix-helix DNA binding domain protein)

PinkCoffee_18

PinkCoffee_19
(RNA ligase)

PinkCoffee_20

PinkCoffee_21
(major capsid protein)

PinkCoffee_22

PinkCoffee_23

PinkCoffee_24
(major tail protein)

PinkCoffee_25
(head-to-tail adaptor)

PinkCoffee_26

PinkCoffee_27

PinkCoffee_28

PinkCoffee_29
(tail assembly chaperone)

PinkCoffee_30
(tail assembly chaperone)

PinkCoffee_31
(tape measure protein)

PinkCoffee_32
(minor tail protein)

PinkCoffee_33
(minor tail protein)

PinkCoffee_34
(minor tail protein)

PinkCoffee_35
(minor tail protein)

PinkCoffee_36

PinkCoffee_37

PinkCoffee_38
(minor tail protein)

PinkCoffee_39

PinkCoffee_40

PinkCoffee_41
(lysin A)

PinkCoffee_42
(holin)

PinkCoffee_43

PinkCoffee_44

PinkCoffee_45

PinkCoffee_46
(lysin B)

PinkCoffee_47
(serine integrase)

PinkCoffee_48

PinkCoffee_49
(tyrosine integrase)

PinkCoffee_50
(immunity repressor)

PinkCoffee_51
(helix-turn-helix DNA binding domain protein)

PinkCoffee_52

PinkCoffee_53

PinkCoffee_54

PinkCoffee_55

PinkCoffee_56
(RecE-like exonuclease)

PinkCoffee_57
(RecT-like ssDNA binding protein)

PinkCoffee_58

PinkCoffee_59

PinkCoffee_60

PinkCoffee_61
(methyltransferase)

PinkCoffee_62
(helix-turn-helix DNA binding domain protein)

PinkCoffee_63
(helix-turn-helix DNA binding domain protein)

PinkCoffee_64
(helix-turn-helix DNA binding domain protein)

PinkCoffee_65
(RuvC-like resolvase)

PinkCoffee_66

PinkCoffee_67

PinkCoffee_68

PinkCoffee_69

PinkCoffee_70

PinkCoffee_71

PinkCoffee_72

PinkCoffee_73
(histidine triad nucleotide binding protein)

PinkCoffee_74
(PnuC-like nicotinamide riboside transporter)

PinkCoffee_75

PinkCoffee_76

PinkCoffee_77

PinkCoffee_78

PinkCoffee_79

PinkCoffee_80

PinkCoffee_81

PinkCoffee_82

PinkCoffee_83
(DNA methylase)

PinkCoffee_84

PinkCoffee_85

PinkCoffee_86
(HNH endonuclease)

PinkCoffee_87
(helix-turn-helix DNA binding domain protein)

PinkCoffee_88

PinkCoffee_89

PinkCoffee_90

PinkCoffee_91

PinkCoffee_92

PinkCoffee_93

PinkCoffee_94

PinkCoffee_95

PinkCoffee_96

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ622177
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.66x10^8 pfu/mL
Pitt Freezer Box# 119
Pitt Freezer Box Grid# G5
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload