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Gordonia phage Fugax
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Detailed Information for Phage Fugax
Discovery Information
Isolation HostGordonia terrae 3612
Found ByEvan Klein
Year Found2016
Location FoundGrand Rapids, MI USA
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature13°C
GPS Coordinates42.929521 N, 85.588677 W Map
Discovery NotesThe soil was dark and damp, with fine particles evenly distributed throughout the soil.
Naming NotesFugax is Latin for elusive. I conducted 5 unsuccessful soil extractions before finally capturing Fugax, which is why I have named him Fugax..
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 2, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage818
Genome length (bp)59506
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionCalvin University
Annotation StatusIn GenBank
Plaque NotesThe phage appears to be siphoviridae, with a non-contractile tail. The tail was striated, and was approximately 300 nanometers in length. The capsid had six distinct sides, approximately 70 nanometers in length and width.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Fugax_1
(helix-turn-helix DNA binding domain protein)

Fugax_2

Fugax_3

Fugax_4

Fugax_5
(terminase)

Fugax_6

Fugax_7

Fugax_8
(ASC-1 transcription coactivator)

Fugax_9

Fugax_10
(polynucleotide kinase)

Fugax_11

Fugax_12
(portal protein)

Fugax_13

Fugax_14
(ADP-ribosyltransferase domain and MuF-like fusion protein)

Fugax_15

Fugax_16

Fugax_17
(ribbon-helix-helix DNA binding domain protein)

Fugax_18
(capsid maturation protease)

Fugax_19
(RNA ligase)

Fugax_20

Fugax_21
(major capsid hexamer protein)

Fugax_22

Fugax_23

Fugax_24
(major tail protein)

Fugax_25
(head-to-tail adaptor)

Fugax_26

Fugax_27

Fugax_28

Fugax_29
(tail assembly chaperone)

Fugax_30

Fugax_31
(tape measure protein)

Fugax_32
(minor tail protein)

Fugax_33
(minor tail protein)

Fugax_34

Fugax_35
(minor tail protein)

Fugax_36

Fugax_37

Fugax_38
(minor tail protein)

Fugax_39

Fugax_40

Fugax_41

Fugax_42
(lysin A)

Fugax_43
(holin)

Fugax_44

Fugax_45

Fugax_46

Fugax_47
(lysin B)

Fugax_48
(serine integrase)

Fugax_49

Fugax_50
(tyrosine integrase)

Fugax_51
(immunity repressor)

Fugax_52
(excise)

Fugax_53

Fugax_54

Fugax_55

Fugax_56

Fugax_57
(RecE-like exonuclease)

Fugax_58
(RecT-like ssDNA binding protein)

Fugax_59

Fugax_60

Fugax_61

Fugax_62
(methyltransferase)

Fugax_63

Fugax_64

Fugax_65

Fugax_66
(RuvC-like resolvase)

Fugax_67

Fugax_68

Fugax_69

Fugax_70

Fugax_71

Fugax_72

Fugax_73

Fugax_74
(histidine triad nucleotide binding protein)

Fugax_75
(PnuC-like nicotinamide riboside transporter)

Fugax_76

Fugax_77

Fugax_78

Fugax_79

Fugax_80

Fugax_81

Fugax_82

Fugax_83

Fugax_84

Fugax_85
(DNA methylase)

Fugax_86

Fugax_87

Fugax_88
(DnaJ-like chaperonin)

Fugax_89
(helix-turn-helix DNA binding domain protein)

Fugax_90

Fugax_91

Fugax_92

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ005680
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 8.2x10^7 phage/ml
Date of SEA Lysate Titering Nov 30, 2016
Pitt Freezer Box# 39
Pitt Freezer Box Grid# A7
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload